rs227276274 SNP Detail

Summary

• ID
  rs227276274
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9305768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATAGCTA TGCATGCAGC
  CCGACATATT TGTTGAGCAC ATCGTGTTTC AAAGACAAGT CAATGTGTTT GCCACATCTA
  TTTGAAAAGA TATATTTAGA GTAAGATAAT GAGTTTCTCA TGTGTTCTAT GTGAGAGGGG
  GATTTCCTCA GGGTTTCATG ATGGCTAAAA CTGTAGTGAC AATAGAAAGA CACCATGTCA
  Y
  CTGTCAACTT ATGATTTTAG ACTCAGACAC TTGATCTGAA AGTGAAGGTA TAATAGTCTT
  AATAGTAAGC ATAAGCTGTA CTCATTATTG AAAATCAATA TATAAAATAG TGACATTTGG
  ACAACTAAAG AAGAGAAATG CTATGAATTT GACAGAATTA CTCTCCATGT GATTTTGCTA
  TGACTTAAAG GTTATTTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403025324	MGP_WTSI_X_9016655	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227276274					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403025324	MGP_WTSI_X_9016655	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9305768 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Rr406085	regulatory region 406085	1018 bp upstream
Rr689864	regulatory region 689864	1773 bp proximal
Tssr162893	transcription start site region 162893	1986 bp upstream
Tssr162894	transcription start site region 162894	1950 bp upstream
Tssr162895	transcription start site region 162895	1894 bp upstream
Tssr162896	transcription start site region 162896	1867 bp upstream
Tssr162897	transcription start site region 162897	1836 bp upstream
Tssr162898	transcription start site region 162898	1816 bp upstream
Tssr162899	transcription start site region 162899	1676 bp upstream
Tssr162900	transcription start site region 162900	1658 bp upstream
Tssr162901	transcription start site region 162901	1629 bp upstream
Tssr162902	transcription start site region 162902	1546 bp upstream
Tssr162903	transcription start site region 162903	1492 bp upstream
Tssr162904	transcription start site region 162904	1385 bp upstream
Tssr162905	transcription start site region 162905	1311 bp upstream
Tssr162906	transcription start site region 162906	1296 bp upstream
Tssr162907	transcription start site region 162907	1224 bp upstream
Tssr162908	transcription start site region 162908	1193 bp upstream
Tssr162909	transcription start site region 162909	394 bp downstream
Tssr162910	transcription start site region 162910	419 bp downstream
Tssr162911	transcription start site region 162911	473 bp downstream