rs227277619 SNP Detail

Summary

• ID
  rs227277619
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92471851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCTCTTA TGTAGTCTTC
  CTTGAACGAC GACGACTTTG GGGTGTTTTG GGTTTTCTGT TTTTCATGTT CTTTTGATGT
  TTTTTCCCCC TCTTTTGCTT TTTCTTTTGG CTGATCTGCA AGAAATGAGA AAAAGGCAAT
  GCTTTCCAAT GTTGTAGTTT CTCCCCTTCG AGATGGTCCA ACTCCTGAGT GTGATCTCTC
  Y
  TTATCCTCAG AGCCAGCTCA CGTCGCTGCT CTCTCAGAGG CGCTGGCCTC ATTATCTGCT
  GCCCCTACAT TAAAGAAGCT ACAGTTCCCT CTTTGCTTGT TTGTCTGTTT TCTGGCATCT
  TGCTGTCTTT CATCTTCTCC CTTCATCTCC CACCTGGGCC AAACACAGCC CTTTGGGGCT
  GGCTGGTAGC GTTATCACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365880944	MGP_WTSI_5_92753018	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227277619					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365880944	MGP_WTSI_5_92753018	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92471851 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	within coordinates
Rr614602	regulatory region 614602	1805 bp distal
Rr614603	regulatory region 614603	355 bp distal
Tssr47287	transcription start site region 47287	1001 bp downstream
Tssr47288	transcription start site region 47288	213 bp downstream
Tssr47289	transcription start site region 47289	203 bp downstream
Tssr47290	transcription start site region 47290	188 bp downstream
Tssr47291	transcription start site region 47291	146 bp downstream
Tssr47292	transcription start site region 47292	1125 bp upstream
Tssr51864	transcription start site region 51864	1250 bp upstream
Tssr51865	transcription start site region 51865	1166 bp upstream
Tssr51866	transcription start site region 51866	886 bp upstream
Tssr51867	transcription start site region 51867	284 bp upstream
Tssr51868	transcription start site region 51868	238 bp upstream
Tssr51869	transcription start site region 51869	196 bp upstream
Tssr51870	transcription start site region 51870	146 bp upstream
Tssr51871	transcription start site region 51871	111 bp upstream
Tssr51872	transcription start site region 51872	1120 bp downstream