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rs227279349 SNP Detail
Summary
  • ID
    rs227279349
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr17:48043525 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CGGCGGGCAG ATTGTGTTCG
GTGGCGTGGA CGAGAACCTG TACACTGGCG AGCTCACCTG GATTCCTGTC ACCCAGGAGC
TTTACTGGCA GATCACCATT GACGAGTGAG TCTGGTCGGG CCTCAGACAT TCTAAGCCAT
CCACCCACCC ATCCCGGCAC TGCTGGTAGA GGGTGGGTGG GAGACCCTCC TCCAAAGTCA
Y
AGGTCACCTA TGCAGCAGTC TGGCAGCCCA GCCAACTCCG AAGAAGAGAG GGTATGGCCA
CACAGGGACA GTCAGCACAT ATGATCTCAG ACACCAGGGA GGGCCCCGGT AATCCAACGC
TACAGGTTAG AAGCTGTTTC ACCATCCTTG CGACAGCCAG TGAGTGGCTC TCTGACTTTC
AGTGTGTCTA GAGCCTTCCT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss398353026 MGP_WTSI_17_47869549 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs227279349 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss398353026 MGP_WTSI_17_47869549 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:48043525 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Pgc progastricsin (pepsinogen C) within coordinates
Rr528106 regulatory region 528106 1870 bp distal
Tssr5149 transcription start site region 5149 1112 bp downstream
Tssr145017 transcription start site region 145017 1995 bp downstream
Tssr145018 transcription start site region 145018 1989 bp downstream
Tssr145019 transcription start site region 145019 1958 bp downstream
Tssr145020 transcription start site region 145020 1929 bp downstream
Tssr145021 transcription start site region 145021 1899 bp downstream
Tssr145022 transcription start site region 145022 1872 bp downstream
Tssr145023 transcription start site region 145023 1834 bp downstream
Tssr145024 transcription start site region 145024 1732 bp downstream
Tssr145025 transcription start site region 145025 1369 bp downstream
Tssr145026 transcription start site region 145026 1129 bp downstream
Tssr145027 transcription start site region 145027 188 bp downstream
Tssr145028 transcription start site region 145028 147 bp downstream
Tssr145029 transcription start site region 145029 130 bp downstream
Tssr145030 transcription start site region 145030 354 bp upstream
Tssr145031 transcription start site region 145031 370 bp upstream
Tssr145032 transcription start site region 145032 378 bp upstream
Tssr145033 transcription start site region 145033 459 bp upstream
Tssr145034 transcription start site region 145034 461 bp upstream
Tssr145035 transcription start site region 145035 1151 bp upstream
Tssr145036 transcription start site region 145036 1159 bp upstream
Tssr145037 transcription start site region 145037 1203 bp upstream
Tssr145038 transcription start site region 145038 1213 bp upstream
Tssr145039 transcription start site region 145039 1578 bp upstream
Tssr145040 transcription start site region 145040 1602 bp upstream
Tssr145041 transcription start site region 145041 1639 bp upstream
Tssr145042 transcription start site region 145042 1657 bp upstream
Tssr145043 transcription start site region 145043 1712 bp upstream
Tssr145044 transcription start site region 145044 1729 bp upstream
Tssr145045 transcription start site region 145045 1739 bp upstream
Tssr145046 transcription start site region 145046 1758 bp upstream
Tssr145047 transcription start site region 145047 1806 bp upstream
Tssr145048 transcription start site region 145048 1838 bp upstream
Tssr148467 transcription start site region 148467 1968 bp upstream
Tssr148468 transcription start site region 148468 1931 bp upstream
Tssr148469 transcription start site region 148469 1837 bp upstream
Tssr148470 transcription start site region 148470 162 bp upstream
Tssr148471 transcription start site region 148471 140 bp upstream
Tssr148472 transcription start site region 148472 126 bp upstream
Tssr148473 transcription start site region 148473 112 bp upstream
Tssr148474 transcription start site region 148474 94 bp upstream
Tssr148475 transcription start site region 148475 427 bp downstream
Tssr148476 transcription start site region 148476 455 bp downstream
Tssr148477 transcription start site region 148477 486 bp downstream
Tssr148478 transcription start site region 148478 1198 bp downstream
Tssr148479 transcription start site region 148479 1236 bp downstream
Tssr148480 transcription start site region 148480 1714 bp downstream
Tssr148481 transcription start site region 148481 1744 bp downstream
Tssr148482 transcription start site region 148482 1875 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory