rs227287223 SNP Detail

Summary

• ID
  rs227287223
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110680064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGACTTAA TACTAAAATG
  CTTAACAAGC AAATTCCACA CAGACCACTT CACAAATACC CTATAGTAGG GATCGTAATT
  TTGAAATACC AGCAAACATA AACCAAGAGG ATGAAAAGCA GTTTGGAATT ATGAATCCAC
  ATCAAGATTA CTGATGACTT CCCAAGAATT ACCCTGTTAG CATGGAAGTC TTTAATCAAA
  Y
  CGACAGTTTT AAGTTAACTG TCTTTACAAG TTTTACCATA CCTGTTGCCA GCAGTCTTGG
  GATAGTGCTG AGGTGCACCC CTACTTCCTC CTCCGCCCGA AGAAGCACTA TTCAAAAGAA
  AATTTTTACT ATACCAATTA TGCCTCACTT GGAAGGGAAC CTATTTATAT TTTAGAAACT
  GCGTAACAAA GTGAACTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372719414	MGP_WTSI_7_118224371	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227287223					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372719414	MGP_WTSI_7_118224371	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110680064 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19582	CpG island 19582	1114 bp proximal
Eif4g2	eukaryotic translation initiation factor 4, gamma 2	within coordinates
Gm57201	predicted gene, 57201	1708 bp upstream
Rr166519	regulatory region 166519	863 bp distal
Rr166520	regulatory region 166520	within coordinates
Rr381309	regulatory region 381309	243 bp upstream
Tssr2372	transcription start site region 2372	535 bp upstream
Tssr68538	transcription start site region 68538	664 bp downstream
Tssr74294	transcription start site region 74294	1520 bp upstream
Tssr74295	transcription start site region 74295	544 bp upstream
Tssr74296	transcription start site region 74296	74 bp downstream
Tssr74297	transcription start site region 74297	739 bp downstream
Tssr74298	transcription start site region 74298	1169 bp downstream
Tssr74299	transcription start site region 74299	1358 bp downstream
Tssr74300	transcription start site region 74300	1590 bp downstream
Tssr74301	transcription start site region 74301	1672 bp downstream
Tssr74302	transcription start site region 74302	1751 bp downstream