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rs227290504 SNP Detail
Summary
  • ID
    rs227290504
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr14:55204640 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACAAGCTCCC ATCCCAGGCT
CTCCCTTCCC CCTTTCAACC CTGGCTATCT GCATAGCTTC AGGCTGAGGG GAGCCTCCTA
CTCTCTCAGA CCTGAAGTTC CACAGTGCTG GCTCCCCAGA GACAAAGTCA TGATGTCTAG
GGAGGGCATC CAATTTGCAG GTGCACGACT CAGTTTCCCT TTGATAGTAA GAGAATTCTA
Y
GCTCCCCTCC TCTCTCTCCT TACTCTGTGC AGATACTGTC TGTAGTCTCT GTTGCCCACA
TCTCTAGACA GGTGTCCTCC AAAGACCTTG CTACCTTGGC TTAGGGACAC ATATAGAGTG
TCCATTCTAT TTTCCATGGT CCCTGAGATG CAGGCCATCA TCCAATCTCT TTAAACCATG
GAAGGGATTC ACCCACTTTG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss391147584 MGP_WTSI_14_55586020 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs227290504 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss391147584 MGP_WTSI_14_55586020 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr14:55204640 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Mhrt myosin heavy chain associated RNA transcript 1575 bp upstream
Myh6 myosin, heavy polypeptide 6, cardiac muscle, alpha 256 bp upstream
Rr407057 regulatory region 407057 within coordinates
Rr492378 regulatory region 492378 589 bp distal
Rr492379 regulatory region 492379 52 bp distal
Rr492380 regulatory region 492380 1052 bp proximal
Tssr4419 transcription start site region 4419 881 bp upstream
Tssr4420 transcription start site region 4420 768 bp upstream
Tssr4421 transcription start site region 4421 762 bp upstream
Tssr4422 transcription start site region 4422 710 bp upstream
Tssr4423 transcription start site region 4423 684 bp upstream
Tssr4424 transcription start site region 4424 646 bp upstream
Tssr4425 transcription start site region 4425 533 bp upstream
Tssr125718 transcription start site region 125718 1489 bp upstream
Tssr125719 transcription start site region 125719 1568 bp upstream
Tssr125720 transcription start site region 125720 1598 bp upstream
Tssr125721 transcription start site region 125721 1618 bp upstream
Tssr128732 transcription start site region 128732 1887 bp upstream
Tssr128733 transcription start site region 128733 1852 bp upstream
Tssr128734 transcription start site region 128734 1824 bp upstream
Tssr128735 transcription start site region 128735 1781 bp upstream
Tssr128736 transcription start site region 128736 1749 bp upstream
Tssr128737 transcription start site region 128737 1722 bp upstream
Tssr128738 transcription start site region 128738 1710 bp upstream
Tssr128739 transcription start site region 128739 1359 bp upstream
Tssr128740 transcription start site region 128740 1289 bp upstream
Tssr128741 transcription start site region 128741 1216 bp upstream
Tssr128742 transcription start site region 128742 598 bp upstream
Tssr128743 transcription start site region 128743 575 bp upstream
Tssr128744 transcription start site region 128744 246 bp upstream
Tssr128745 transcription start site region 128745 35 bp downstream
Tssr128746 transcription start site region 128746 769 bp downstream
Tssr128747 transcription start site region 128747 798 bp downstream
Tssr128748 transcription start site region 128748 817 bp downstream
Tssr128749 transcription start site region 128749 880 bp downstream
Tssr128750 transcription start site region 128750 899 bp downstream
Tssr128751 transcription start site region 128751 916 bp downstream
Tssr128752 transcription start site region 128752 969 bp downstream
Tssr128753 transcription start site region 128753 1158 bp downstream
Tssr128754 transcription start site region 128754 1237 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory