rs227294000 SNP Detail

Summary

• ID
  rs227294000
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:54492366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGATAGG ATTAAAGGCA
  TGGGCCATCA CTGCCAGTCT GCAAACTCTG ATTTGTCCTC AACATGGTTT TTGTTTTTGT
  TTACCACGTT GAAACATAGA AACTGGGGTA ATCTAAACCT GTGTTTCCTG GCCTTAGTTA
  CTTATATTTG GTCAGACTAA ACCCCCTCTT ACTCTTTTTG AAGTAAGAGT TATAGTGTGT
  R
  AATGGAGAAT GTGAGTGTGG TGTGTGTGTG TGGGGGGGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGGGAG GGAGAGAGAG AGAGAGCGCT TGAGTGCTTG
  AGTGCTTCAT GGCTTCATGG TAGGTATCCT TACCTTAGCT TTTGAGACAG GTCTCCCACT
  CACTAAACAA CCTGGGGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322965081	CHEV_9_54432889	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227294000					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54492366 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21767	CpG island 21767	1149 bp proximal
Idh3a	isocitrate dehydrogenase 3 (NAD+) alpha	1429 bp upstream
Rr401372	regulatory region 401372	1065 bp upstream
Rr679158	regulatory region 679158	965 bp distal
Rr679159	regulatory region 679159	762 bp proximal
Rr679160	regulatory region 679160	1440 bp proximal
Tssr85161	transcription start site region 85161	1368 bp upstream
Tssr85162	transcription start site region 85162	1946 bp upstream