rs227297014 SNP Detail

Summary

• ID
  rs227297014
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:90982194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGTGGATG AGGACGACGG TGATTGAAAA
  TTGGGCACCG GGGAGTTGGG GGATTTTTGG TTGTTACAGC CTGTGTAGTT tatagttttg
  gggtctggga gttcaggcag gatccataac ccaaactagc cttgctctca ggattctcat
  K
  tctcaaccct tccactatcg ggcttacaag cctgcatcac cCACCCACCC CCCCCACCCC
  CGCGCGCCTT ATCCATGGCT GTGGTTGCTT ATTAGTGGGA ATATTTCAAA GTAAATTGTA
  CTCTGTGAAA CCATGTATTT TATGGAGTTG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319838834	CHEV_1_92951049	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227297014					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:90982194 () rs orientation: forward

Symbol	Name	Function Class
Cpgi568	CpG island 568	744 bp distal
Lrrfip1	leucine rich repeat (in FLII) interacting protein 1	within coordinates
Rr29813	regulatory region 29813	within coordinates
Rr396168	regulatory region 396168	1410 bp downstream
Tssr8032	transcription start site region 8032	1280 bp downstream
Tssr8033	transcription start site region 8033	952 bp downstream
Tssr8034	transcription start site region 8034	940 bp downstream
Tssr8035	transcription start site region 8035	922 bp downstream
Tssr8036	transcription start site region 8036	910 bp downstream
Tssr8037	transcription start site region 8037	480 bp downstream
Tssr12924	transcription start site region 12924	1644 bp upstream
Tssr12925	transcription start site region 12925	1626 bp upstream
Tssr12926	transcription start site region 12926	1600 bp upstream
Tssr12927	transcription start site region 12927	1574 bp upstream
Tssr12928	transcription start site region 12928	1424 bp upstream
Tssr12929	transcription start site region 12929	622 bp upstream