rs227297064 SNP Detail

Summary

• ID
  rs227297064
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:104082573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTACAAA TTCAACCTGA
  CGCTTATTTT ACCAGACAGA GCAAGGAAAT GAACTCTCCC TGTCATTCTT GGCTTCTGTC
  TTTATGGTAG AGAAGGGAAT GCTAGGGATC TTCCGTTGCG CAGAGTGGTG GGTGAGGTGC
  ATTATTCTGC TATCAGCAAG ATCCTGCTGT GCCTGCAGAG GAGGTCATCC TCTAGACCCC
  Y
  TTTGTCTCCC AGCTAGTTCA TTGTACAACT AGGATTTGCA TCTTAGATGG GCAACGCCTA
  TCAAATGTTT CCCATGAAGC TGGAAGCAGA ACGTGCGCGT GTATGTTAAA AGGTGAACTT
  TAAATGTGGA CTGTAGTTAA GTCTAAGGGA TGGGAACTAT GGCCTGGGCA TGAGCACCAA
  TTCCAAATCA GGTTGTTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392314168	MGP_WTSI_14_104244354	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	T	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227297064					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	T	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392314168	MGP_WTSI_14_104244354	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:104082573 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6819	CpG island 6819	721 bp distal
Ednrb	endothelin receptor type B	809 bp upstream
Gm35197	predicted gene, 35197	within coordinates
Rr407	regulatory region 407	520 bp distal
Rr390089	regulatory region 390089	within coordinates
Rr497067	regulatory region 497067	1452 bp distal
Rr497068	regulatory region 497068	951 bp distal
Rr497069	regulatory region 497069	455 bp distal
Tssr130120	transcription start site region 130120	1982 bp upstream
Tssr130121	transcription start site region 130121	1653 bp upstream
Tssr130122	transcription start site region 130122	1586 bp upstream
Tssr130123	transcription start site region 130123	1536 bp upstream
Tssr130124	transcription start site region 130124	1504 bp upstream
Tssr130125	transcription start site region 130125	1434 bp upstream
Tssr130126	transcription start site region 130126	1422 bp upstream
Tssr130127	transcription start site region 130127	1309 bp upstream
Tssr130128	transcription start site region 130128	958 bp upstream
Tssr130129	transcription start site region 130129	939 bp upstream
Tssr130130	transcription start site region 130130	916 bp upstream
Tssr130131	transcription start site region 130131	899 bp upstream
Tssr130132	transcription start site region 130132	870 bp upstream
Tssr130133	transcription start site region 130133	839 bp upstream
Tssr130134	transcription start site region 130134	832 bp upstream
Tssr130135	transcription start site region 130135	797 bp upstream
Tssr130136	transcription start site region 130136	778 bp upstream
Tssr130137	transcription start site region 130137	734 bp upstream
Tssr130138	transcription start site region 130138	705 bp upstream
Tssr130139	transcription start site region 130139	673 bp upstream