rs227297643 SNP Detail

Summary

• ID
  rs227297643
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:30851060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGACTGCA GCGCCACAGC
  CCGGCCGCAA GAGTTAGGTC GCGGAAGTTA GGACAGACCC AAAGCCTGGT CGGCTCCGCC
  AATCAGAATG TGGCGGGACT CTCAGACTCT CCAATCAGAG TGCTGTTTGA GCGCGCGTGC
  TCTGTGAGGC TGAGTCGGTC TGAAGAAGCC TGCGCACGCG CCTAGATTCT GGAGACGGAG
  W
  ACCTTCGGGG GGCGGGGTCT CCAACGTGGC GTGGCGGCCC CGCCCTCGAC CTGCTCTCAC
  TGCTGAGGCT CAGAGTTTAC TGCCGCGCCC CCTACTCTGC CATCGCCATC TTTTTTTGTA
  ATACCCTGAC CGAGGTGTCG ACCCTTTGTG AATGAAATCA GCTAAAATGC AGTTTCGTGA
  CACTCCTTCC TTTTATTTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390696762	MGP_WTSI_14_31942289	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227297643					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390696762	MGP_WTSI_14_31942289	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:30851060 () rs orientation: forward

Symbol	Name	Function Class
B930019K04Rik	RIKEN cDNA B930019K04 gene	756 bp downstream
Cpgi6281	CpG island 6281	within coordinates
Cpgi6282	CpG island 6282	1335 bp proximal
Nt5dc2	5'-nucleotidase domain containing 2	1986 bp upstream
Rr404046	regulatory region 404046	within coordinates
Rr489956	regulatory region 489956	1865 bp distal
Rr489957	regulatory region 489957	within coordinates
Rr489958	regulatory region 489958	100 bp proximal
Rr489959	regulatory region 489959	1460 bp proximal
Rr489960	regulatory region 489960	1792 bp proximal
Tssr124915	transcription start site region 124915	1950 bp upstream
Tssr124916	transcription start site region 124916	1976 bp upstream
Tssr127917	transcription start site region 127917	180 bp upstream
Tssr127918	transcription start site region 127918	143 bp upstream
Uqcc5	ubiquinol-cytochrome c reductase complex assembly factor 5	166 bp upstream