rs227299637 SNP Detail

Summary

• ID
  rs227299637
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174188540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTAGATGT TCCAAATTTA
  GTAAGCTTAA GGCGGCCTAC AGAAGAAAAA GAAAAAAAAG GCCACAAAAG TTCCCTCTCA
  CTTTCAGTAA ATAAAATAAA AGCAGCAACA GAAATAAAGA AATAAATGAA ATTCAAAATG
  AAATAAATAT TGTGTTGTGC AGCATTAAAA AATCAATAAA AATTAAAAAT GAGCAAAATA
  S
  GGTGTTGCTC TTTGATTTGC GGCAAGTGGG TCCCAGGGTC CATGGGTGGG ATTGGTCTCG
  GCACCCACTG GGAGGTGGAG AACAGGTCCC AGGGCTAAAA GTGGGCTGAG GAGTTGGCAC
  TATAGACTGG GGGAACCTAG TTTTTGGCGC ATCAAAGCTT CCACCCATTA TCCTGCCCCC
  AGGCAGTTGC TAGCTGCCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356687560	MGP_WTSI_2_174172248	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227299637					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356687560	MGP_WTSI_2_174172248	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174188540 () rs orientation: forward

Symbol	Name	Function Class
Gnas	GNAS complex locus	3 bp downstream
Rr572113	regulatory region 572113	397 bp proximal
Tssr792	transcription start site region 792	397 bp downstream
Tssr22137	transcription start site region 22137	1296 bp downstream
Tssr22138	transcription start site region 22138	1231 bp downstream
Tssr22139	transcription start site region 22139	714 bp downstream
Tssr22140	transcription start site region 22140	433 bp downstream
Tssr22141	transcription start site region 22141	414 bp downstream
Tssr22142	transcription start site region 22142	377 bp downstream
Tssr22143	transcription start site region 22143	232 bp downstream
Tssr22144	transcription start site region 22144	167 bp downstream
Tssr22145	transcription start site region 22145	146 bp downstream
Tssr22146	transcription start site region 22146	109 bp downstream
Tssr28013	transcription start site region 28013	1618 bp upstream
Tssr28014	transcription start site region 28014	1207 bp upstream