rs227299898 SNP Detail

Summary

• ID
  rs227299898
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:184543605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGAGCCC AAAGGTCAGC
  AGCTCCTGAC CCTTCCCCTC CAATCCAAAT TGTGCATCTT CATTCGGCCT GGGCGGGAGG
  TGGTGGCTCA GCTGTGGAAT CTCACCGCCT GCCCCTACTT TCCGCTGCCT TCCCCCCCTT
  CGGTCCCTCC CTCCCTCCCT CCCCTTCCCT CCCTCGCTGA CCCTCTCCCA GGATCAATCA
  R
  TGCAGAGCAG CTTATTTACA TGTTTGCAGA GTTGTTTATT TGACCTAAAA CACACAACGT
  TTGCAGAACG TGGCGTGATT TTGAAATTAG AAACCAGGCT GCGGGCAGCC GCCCCTCTGG
  GGTCTGTGGG GAGCAGTTTG GCAGCAGCCA GGGTGCTTCC AACCAGCTGG GATATGAAGG
  GAAAAGATCT GACCAGCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352675744	MGP_WTSI_1_186635287	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227299898					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352675744	MGP_WTSI_1_186635287	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184543605 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1161	CpG island 1161	71 bp distal
Gm70890	predicted gene, 70890	516 bp upstream
Mtarc1	mitochondrial amidoxime reducing component 1	mRNA-UTR
Mtarc2	mitochondrial amidoxime reducing component 2	1660 bp downstream
Rr425290	regulatory region 425290	within coordinates
Rr425291	regulatory region 425291	527 bp proximal
Rr425292	regulatory region 425292	940 bp proximal
Rr425293	regulatory region 425293	1088 bp proximal
Tssr15650	transcription start site region 15650	417 bp upstream
Tssr15651	transcription start site region 15651	245 bp upstream
Tssr15652	transcription start site region 15652	205 bp upstream
Tssr15653	transcription start site region 15653	144 bp upstream
Tssr15654	transcription start site region 15654	105 bp upstream
Tssr15655	transcription start site region 15655	94 bp upstream