rs227302391 SNP Detail

Summary

• ID
  rs227302391
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:141938529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCCCAGA ACCTTCCACA
  GAGCTCGGAC CAGCTCACCA TGTGACTTCC AGAAATGTTT CTCCTCGGGG CCTACATTCC
  CTCCGAGGAG AGTGGGCTGC TGAGCCAGAC CTGTAACCTC AACCATTCGG GAGGCCAAGA
  TATGAGGATG GTAAATTCAA AGCTAGCTTG GGCAATTATG TCAAAAGTAA GAAAAAGGAG
  Y
  GGGTACAGTG GTAGAGTTTG CCTAATATAA GGTACAAGGC CCTAGTCGGT TCAACCCCAG
  AGAAAGGGGG AAGGGAAGCA CTAAAGAGCC GGGGGCAGGT TGATCTTGGG AAAATGGCAA
  AGGGGATCAG AGACCTCTCC TAGAACTTGT ACAGAGGGAG GCACCAGCAA GGTGGACCTA
  TATAGGTCCA GTAACTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373450052	MGP_WTSI_7_149570697	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227302391					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373450052	MGP_WTSI_7_149570697	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141938529 () rs orientation: forward

Symbol	Name	Function Class
Ctsd	cathepsin D	Intron
Rr381604	regulatory region 381604	1416 bp upstream
Rr658152	regulatory region 658152	109 bp distal
Rr658153	regulatory region 658153	1023 bp proximal
Tssr70144	transcription start site region 70144	1317 bp downstream
Tssr70145	transcription start site region 70145	666 bp upstream
Tssr70146	transcription start site region 70146	698 bp upstream
Tssr75784	transcription start site region 75784	1326 bp upstream
Tssr75785	transcription start site region 75785	1297 bp upstream
Tssr75786	transcription start site region 75786	1256 bp upstream
Tssr75787	transcription start site region 75787	714 bp downstream
Tssr75788	transcription start site region 75788	801 bp downstream
Tssr75789	transcription start site region 75789	824 bp downstream
Tssr75790	transcription start site region 75790	1087 bp downstream
Tssr75791	transcription start site region 75791	1115 bp downstream
Tssr75792	transcription start site region 75792	1136 bp downstream
Tssr75793	transcription start site region 75793	1879 bp downstream