rs227311428 SNP Detail

Summary

• ID
  rs227311428
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:79753087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAACCTCA TGCACACACA
  GTCCAAGGCA CGGCAGACTG GTCTTGATCG GAGTGAACAA TCTATCTCAG ATCATTACAC
  AGGGACAATT TAACTGCCTC TTTTTGTTTG CTAGTTTTTC TTATTTTGAG AAGGAGTCTC
  ACTCGTAGCC CTGGCTAGTT TGGAGCTTGC TTTGTAGACC AGGCTGGCCT CCAATGGGGA
  Y
  CTGCCTGCCT CTGCCTCACC AGTGCTGGGA TCAAAGGCAC TGGTCACCAT GCCTGATTTT
  AACTATCATT TAAAAACAAT TTTTTTTTTG TATTTTGGAA TTGGTTTAAG GTTGATGTTC
  CAGTTTGGAT ATTGCACTGT TTCAGAAGGC ATTTAAACCT GCTTCAAATA GCATTGCAAC
  CTTGGAGTGC CAAGTATGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375274831	MGP_WTSI_8_81550357	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227311428					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375274831	MGP_WTSI_8_81550357	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:79753087 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20619	CpG island 20619	1444 bp proximal
Gm63940	predicted gene, 63940	within coordinates
Rr400985	regulatory region 400985	1848 bp upstream
Rr665783	regulatory region 665783	120 bp distal
Rr665784	regulatory region 665784	1489 bp proximal
Tssr2612	transcription start site region 2612	1893 bp upstream
Tssr78123	transcription start site region 78123	1511 bp upstream
Tssr78124	transcription start site region 78124	1720 bp upstream
Tssr78125	transcription start site region 78125	1795 bp upstream
Tssr78126	transcription start site region 78126	1859 bp upstream
Zfp827	zinc finger protein 827	1979 bp upstream