rs227318397 SNP Detail

Summary

• ID
  rs227318397
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:184542196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTCTAA TGATCTTTGG
  TTCTTGAGAT ATGAAGAATT GCAAAACACA GGTGATGGGG AGAGGGGGGG GGTTGGGGCG
  GGCGGAGAGC AGTCTCACAT TACAAGGTCC ACACTGAACC GAGGAACCCA CTCATCTGTA
  ACTGCCCATC AACCTTATGT AAAAGCCACC CGTAAATCAG CTATGAGACA AGAAGGGCTT
  Y
  GGAGCAAAAA TCTCCATTTC TTCTTCCTGA ACCAGTCGGT CAGCATGTCC ACTGGACCGG
  CCTGATCTGA GGCGAATGGC TTGTGTTAGC TTTAGAGAGC TGAGACGGGG AGGTCGCAGC
  CTCTGTTAGC CTGTGTCCTC TGCTGAAGGA GAGGCCTGAG GATCCTGATA CGCAGCCTTC
  CAGTGATGCC CAGAGCTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352675716	MGP_WTSI_1_186633878	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227318397					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352675716	MGP_WTSI_1_186633878	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184542196 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1161	CpG island 1161	662 bp proximal
Gm70890	predicted gene, 70890	1925 bp upstream
Mtarc1	mitochondrial amidoxime reducing component 1	Intron
Rr425289	regulatory region 425289	1787 bp distal
Rr425290	regulatory region 425290	1188 bp proximal
Rr425291	regulatory region 425291	1936 bp proximal
Tssr15650	transcription start site region 15650	981 bp downstream
Tssr15651	transcription start site region 15651	1157 bp downstream
Tssr15652	transcription start site region 15652	1171 bp downstream
Tssr15653	transcription start site region 15653	1260 bp downstream
Tssr15654	transcription start site region 15654	1287 bp downstream
Tssr15655	transcription start site region 15655	1305 bp downstream