rs227321021 SNP Detail

Summary

• ID
  rs227321021
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:79754263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAGGCAG GGAGTGAATC
  ACAGAAGTCA AGATCACTGT GTGCACTGTA GGAATAGACC CGTGGCAGTT GAGTCAACCC
  TGGGGGGCGG GGGGTGACCT AATCTTATTT TCCCTCTTTA TCAAGAACCT GTAATTTTAG
  TTTTGGCTGA ATTTTCAAGT GTTAACTCCA CCGGACCCTC TAAAATTGGG TATCCATGCC
  R
  CCCATCCACT GATCCCACCC TATGCTATCT TTTCATTTTT TTTTTTTTTA AAAAAGATTT
  ATTTCCATTA GGCTGTTTTA AGGGAGTATG TGAGAGTCTG TAACGTCCAG ACTCAAGGTG
  ATGGGGTGAG AGAGTCAGTC TTTCAGTTAC AAAAGCCTGG GGAATTTTAT ACAGAACCAA
  ACGTAGTTTA ATACACAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375274848	MGP_WTSI_8_81551533	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227321021					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375274848	MGP_WTSI_8_81551533	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:79754263 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20619	CpG island 20619	268 bp proximal
Cpgi20620	CpG island 20620	1053 bp proximal
Rr186908	regulatory region 186908	within coordinates
Rr400985	regulatory region 400985	672 bp upstream
Tssr2612	transcription start site region 2612	717 bp upstream
Tssr78123	transcription start site region 78123	335 bp upstream
Tssr78124	transcription start site region 78124	544 bp upstream
Tssr78125	transcription start site region 78125	619 bp upstream
Tssr78126	transcription start site region 78126	683 bp upstream
Tssr78127	transcription start site region 78127	931 bp upstream
Tssr78128	transcription start site region 78128	995 bp upstream
Zfp827	zinc finger protein 827	803 bp upstream