rs227325176 SNP Detail

Summary

• ID
  rs227325176
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51184102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCGG GAGGGACGAG GCGGGAGGCC
  S
  GGCGGGCGCG TTTTGGCGGG TAGCG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320762238	CHEV_3_51080603	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227325176					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51184102 () rs orientation: forward

Symbol	Name	Function Class
4930577N17Rik	RIKEN cDNA 4930577N17 gene	78 bp upstream
Cpgi13132	CpG island 13132	within coordinates
Elf2	E74-like factor 2	within coordinates
Gm64767	predicted gene, 64767	70 bp downstream
Rr397655	regulatory region 397655	337 bp downstream
Rr576259	regulatory region 576259	407 bp distal
Rr576260	regulatory region 576260	within coordinates
Rr576261	regulatory region 576261	677 bp proximal
Rr576262	regulatory region 576262	788 bp proximal
Tssr29048	transcription start site region 29048	407 bp downstream
Tssr29049	transcription start site region 29049	166 bp upstream
Tssr33194	transcription start site region 33194	621 bp upstream
Tssr33195	transcription start site region 33195	596 bp downstream
Tssr33196	transcription start site region 33196	630 bp downstream
Tssr33197	transcription start site region 33197	789 bp downstream