rs227335883 SNP Detail

Summary

• ID
  rs227335883
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:41094054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATAGCCAG AATTGAAGCC
  CATGGAGGTT CCAATGACCA GGACCACCAG GCCCACAGTG AAAGCCTCCA GGCCACGGGG
  CACAGGGTTG TTATAAGGGT CAACGATGGC CAGTACACAC ACAATAAGGG CGGCTGTGCC
  TATGAACTGG GAGAGGGGAG AGAGCACGGT GAGGGCCAGC TCCTTCTCCC ACGCTCCAGT
  Y
  CTCCACGCTA GAGACCATCC TGACTCTAGG ATGATCGCAA AACCAAGAAC TCACTGGGAA
  GCGCCATGCT TTATAAAAGA CAACGCCACC ACCATGTTCT GAGGTTGGGG TTCTCACGAA
  CTGAGAAGAA ATCCTGCTAC AATCAAGGAG CGTTGTCCAA AACAAGACTG TTCCTCCCTC
  TACCTTTACT TCACATGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361294382	MGP_WTSI_4_41041087	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227335883					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361294382	MGP_WTSI_4_41041087	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:41094054 () rs orientation: forward

Symbol	Name	Function Class
Aqp3	aquaporin 3	within coordinates
Rr590581	regulatory region 590581	1855 bp proximal
Tssr41298	transcription start site region 41298	686 bp upstream
Tssr41299	transcription start site region 41299	614 bp upstream
Tssr41300	transcription start site region 41300	577 bp upstream
Tssr41301	transcription start site region 41301	522 bp upstream
Tssr41302	transcription start site region 41302	453 bp upstream
Tssr41303	transcription start site region 41303	365 bp upstream
Tssr41304	transcription start site region 41304	679 bp downstream
Tssr41305	transcription start site region 41305	762 bp downstream
Tssr41306	transcription start site region 41306	833 bp downstream