rs227336923 SNP Detail

Summary

• ID
  rs227336923
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8971278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATAAAGC ACCCATTGTT
  GAAGTAAAAA TGATAACTGA ATCACCCAAC TTATGTCAAA TGGCTTTCTC TGAGAAGAGG
  TATGAGTCAG TGAGTCTCGT GTAACATGCT GTAGAAATGT CCAGCATCCC ACAGAAAGTT
  GAGGCTCACT CTGGCATCAG AGCATGCAGA AAAGTGTGGC TTGTTTCTCA CTTAAGACAC
  W
  CTCTCTCATT CTCTATTTTT TTTTTTTTTT TTTGCTTGTT TTTCTGGCCT ATTTCAATGT
  CCTTCACAAT CTTTCTCTTC AAGAAGAAAA AAAAAATCAC TATTATCTGT ATAAACTCAA
  CAGCTAAGCG GTTTCTCCAC TTTATCATGC TGTCATTTTC CTTAATCCCT TGGCCTTTGG
  CAGAGTCCAG TGGTATTTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323886811	CHEV_12_8928084	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227336923					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8971278 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4400	CpG island 4400	120 bp proximal
Gm60663	predicted gene, 60663	within coordinates
Laptm4a	lysosomal-associated protein transmembrane 4A	794 bp upstream
Rr403227	regulatory region 403227	527 bp upstream
Rr462715	regulatory region 462715	within coordinates
Rr462716	regulatory region 462716	331 bp proximal
Rr462717	regulatory region 462717	468 bp proximal
Rr462718	regulatory region 462718	571 bp proximal
Rr462719	regulatory region 462719	1325 bp proximal
Tssr112751	transcription start site region 112751	320 bp upstream
Tssr112752	transcription start site region 112752	409 bp upstream
Tssr112753	transcription start site region 112753	429 bp upstream
Tssr112754	transcription start site region 112754	739 bp upstream
Tssr112755	transcription start site region 112755	764 bp upstream
Tssr112756	transcription start site region 112756	783 bp upstream
Tssr115725	transcription start site region 115725	566 bp downstream