rs227340707 SNP Detail

Summary

• ID
  rs227340707
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83299397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAACTGAA GGGGGTTTTC
  CACCTGCATC TCGGGCAGCA CCATCCCACG GACTGACTAA AAAGGCAAAA GGGGAAATTG
  AAATTTGAGC TTAACGCTAA CGTGCATCTC TGCTTCCAGG CTGCATGCAC AGTGCCAGGG
  ACCTCACATT CCCACCACTT TGCCTTCTGG CTACAATAGA TGTGTCTATT GTCATCACAA
  K
  AGCCAAAACT AAGTCGCTTT TGTCAGGTAC TTGCCACACC AACAAGAAAA GTAAAACGGG
  GGTCTTTGAG ACCCTTTTAG GGGAACAAGA AGCAGTCAGG GTCATAACCT CTGTCAGCCT
  CTTCTGACCC CATTCTTCCA GCCTGAAGCA TTCTGTCAGG TCTCTGGACT CTCAGTTGCT
  CCTAGCCTCA GCTGACCTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384068994	MGP_WTSI_11_83222073	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227340707					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384068994	MGP_WTSI_11_83222073	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83299397 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3411	CpG island 3411	552 bp proximal
Gm72478	predicted gene, 72478	within coordinates
Rasl10b	RAS-like, family 10, member B	566 bp upstream
Rr452947	regulatory region 452947	476 bp proximal
Rr452948	regulatory region 452948	627 bp proximal
Rr452949	regulatory region 452949	1512 bp proximal
Rr452950	regulatory region 452950	1647 bp proximal
Tssr103692	transcription start site region 103692	645 bp upstream
Tssr103693	transcription start site region 103693	1084 bp upstream
Tssr103694	transcription start site region 103694	1149 bp upstream
Tssr103695	transcription start site region 103695	1165 bp upstream