rs227342859 SNP Detail

Summary

• ID
  rs227342859
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:56982978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGACCTTA ATTTTGGAGT
  CGGCTTGCTG AAAGTAGCTG CTGAGTGCTC CAGATGGCTG TGTTTAGAAG ACCGTGAAAG
  TGTAAAAATA AGTGGGTAGG AAGGACAAGG CTTTCTGTCA TTGTTTTGGT TAATTCTCCA
  CGGCGGGTAA TACTACTGCC TTTTCCTTTT CAAATCTCAA AGCCTCGGGT TTCGGCCGCT
  R
  AGCTCCCCGC CATCTCCGAT CCCGGCCTTG GAACGCTGAG GTTCAGTCTC CAGTGTAAAC
  ATTCCACAAA AGGACTGCTA AGGTTCAGCA TCCTCGCGCA GGGCGGAATG GTCTCCTTCC
  TGGACCGGCG CCGTGTCCAA TGGCGGCTCC TACCGGCGCC AAGATAGTCC AATCAGATCA
  TTGGGGGCGG GGCCTGGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377681881	MGP_WTSI_9_56923501	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227342859					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377681881	MGP_WTSI_9_56923501	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56982978 () rs orientation: forward

Symbol	Name	Function Class
2700012I20Rik	RIKEN cDNA 2700012I20 gene	within coordinates
Cpgi21807	CpG island 21807	1492 bp distal
Cpgi21808	CpG island 21808	1087 bp distal
Cpgi21809	CpG island 21809	within coordinates
Gm57026	predicted gene, 57026	929 bp downstream
Rr368762	regulatory region 368762	1307 bp downstream
Rr401392	regulatory region 401392	220 bp downstream
Rr401393	regulatory region 401393	242 bp upstream
Rr679583	regulatory region 679583	1942 bp distal
Rr679586	regulatory region 679586	346 bp distal
Rr679587	regulatory region 679587	within coordinates
Rr679588	regulatory region 679588	140 bp proximal
Rr679589	regulatory region 679589	332 bp proximal
Rr679590	regulatory region 679590	716 bp proximal
Rr679591	regulatory region 679591	1128 bp proximal
Sin3a	transcriptional regulator, SIN3A (yeast)	Intron
Tssr2884	transcription start site region 2884	251 bp downstream
Tssr85284	transcription start site region 85284	1940 bp downstream
Tssr85285	transcription start site region 85285	1822 bp downstream
Tssr85286	transcription start site region 85286	649 bp upstream
Tssr85287	transcription start site region 85287	701 bp upstream