rs227345422 SNP Detail

Summary

• ID
  rs227345422
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16346951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAGGGGA GACGGGGATA
  ATAAGAAAGG AATGATACCT TCAGGTTAGA ACTAAGGAAA AGGACTTAAA AGGAGGTGGA
  GGCAGAACAA GACAGGATCG GAGAATGAAC AAAAAAAAAA TCCAGTGAAA GGCTGAATGG
  GGGGGATGGA GGACTTAGAA TTAAGAAGGA CCAAACATAG AACACAAGGA GACTGGTGTT
  R
  AAGATGATCA CTTTGACAGG GACAGCAACA GTAAAGTTCA AGACGATTCA AAACTATGTA
  GACAAATGGA CAGCTCCAAA AGAGAGGAAA GAGCACCAAA TAAAGAGAAT GAAGGGGAAA
  AGCCGGTAGA AGAAAAGGGC AGAATGGGCA GCGTGTGAAG GATCAGGGTC AGAGTCATCT
  AAAGTGCAGA GAAACACCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370695709	MGP_WTSI_7_17198375	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227345422					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370695709	MGP_WTSI_7_17198375	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16346951 () rs orientation: forward

Symbol	Name	Function Class
Arhgap35	Rho GTPase activating protein 35	within coordinates
Cpgi18383	CpG island 18383	790 bp proximal
Gm29443	predicted gene 29443	798 bp upstream
Rr642705	regulatory region 642705	1180 bp distal
Rr642706	regulatory region 642706	311 bp proximal
Rr642707	regulatory region 642707	809 bp proximal
Rr642708	regulatory region 642708	1957 bp proximal
Tssr70753	transcription start site region 70753	1522 bp downstream
Tssr70754	transcription start site region 70754	1587 bp downstream
Tssr70755	transcription start site region 70755	1644 bp downstream
Tssr70756	transcription start site region 70756	1752 bp downstream
Tssr70757	transcription start site region 70757	1766 bp downstream
Tssr70758	transcription start site region 70758	1823 bp downstream
Tssr70759	transcription start site region 70759	1855 bp downstream
Tssr70760	transcription start site region 70760	1932 bp downstream