rs227347576 SNP Detail

Summary

• ID
  rs227347576
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89096861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGAGAGA TGGCTCAGTG
  GTTAAGAGCA GTGACTGCTC TTCCAGAGGT CCTGAGTTCA ATTTCCAGCA ACCACATGGT
  GGCTCACAAC CATCTGTAAT GAGATCCGAT GCCCTCTTCT TGTGTGTCTG AAGACAGCTA
  CAGTGTACTT ACATAAATTG TCTTCACCTC CTCCCTACCT TCTCCTCTTC CTTGTTTTGT
  Y
  TTGTTTTCCT CCCTGAGACA GGTTTTCTCT ACAGAACCCT GGATGTCTTG GAACTCACTC
  TAGACTAGGC TATCCTAGAA CTCACAAGAA ATCTGGCTGC CTCTGCCTCC CAAGAGCTGG
  GATTAAAGCC CTGTGCCATC ACTGCCTGTT TTTTAAAGAA ACTATGTTTT GGTGGTGCTT
  TTTGGAGAAG TGTGTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358808236	MGP_WTSI_3_88993476	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227347576					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358808236	MGP_WTSI_3_88993476	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89096861 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13408	CpG island 13408	1947 bp distal
Entrep3	endosomal transmembrane epsin interactor 3	259 bp downstream
Rr367465	regulatory region 367465	950 bp upstream
Rr579970	regulatory region 579970	563 bp distal
Rr579971	regulatory region 579971	808 bp proximal
Tssr30057	transcription start site region 30057	1724 bp downstream
Tssr30058	transcription start site region 30058	1658 bp downstream
Tssr30059	transcription start site region 30059	1589 bp downstream
Tssr30060	transcription start site region 30060	1557 bp downstream
Tssr30061	transcription start site region 30061	1226 bp downstream
Tssr30062	transcription start site region 30062	1188 bp downstream
Tssr30063	transcription start site region 30063	1144 bp downstream
Tssr34094	transcription start site region 34094	917 bp upstream