rs227352404 SNP Detail

Summary

• ID
  rs227352404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178232026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTAAAGCA AAGACACAAA
  CTACAAGCTA CAGGTGCGTG CGCACACACG CACACACACA CACACATCTC TCACACACAA
  TTCCAGTCAG AATGTCCCAG TGTATAGAAC AACGTTACTG GCTGGAAATG TATGTGGTAG
  AAACAAGTAA ATAAAATAAA AGCACTATAA ACATTTTGAA AACTTTGCCT ATGGGACCAT
  Y
  GAAGAGGAGG TAAAGATAAG GGGCAGGCAA TGCTCAGGGT CACCTTCCAT CAGGAAGGGA
  CAGTTCTCTT CCTTCCCATA CTTGCTACAA AGTCCTTCAT CTTCAGGGAG AGTAAGGGGA
  ACACACAGAA TGTAAATATT AATATAAAAT AAATAAAATA TTAATATAAA ATAAATAAAA
  TATTAATATA AATTACTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352536875	MGP_WTSI_1_180334592	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227352404					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352536875	MGP_WTSI_1_180334592	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178232026 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1092	CpG island 1092	1166 bp proximal
Efcab2	EF-hand calcium binding domain 2	1624 bp upstream
Gm70920	predicted gene, 70920	1449 bp downstream
Rr20725	regulatory region 20725	1826 bp distal
Rr29069	regulatory region 29069	774 bp proximal
Rr372517	regulatory region 372517	760 bp upstream
Tssr10392	transcription start site region 10392	1556 bp upstream
Tssr10393	transcription start site region 10393	1570 bp upstream
Tssr10394	transcription start site region 10394	1577 bp upstream
Tssr10395	transcription start site region 10395	1591 bp upstream
Tssr10396	transcription start site region 10396	1611 bp upstream
Tssr15493	transcription start site region 15493	1954 bp downstream