rs227353450 SNP Detail

Summary

• ID
  rs227353450
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166904424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTACAGG ATAATTGAGG
  GAAGGGGACA GGGACTCCGG GGGTATAGGG AAACTGAGGG AAAGGGACAG GGACTCTGGA
  GGCTATAGGA AAACTAAGGG AAGGGGACAT GGACTCTGGG GACTATAGGA GAACTGAGGG
  AAGGGGACAG GGACTCCGGG GGTGGTGGGG GCGCTGAGTG GGGCAGATAG GGACTCCAAG
  R
  CTAACCTGAC ACCCGGCCGG AGGCAGAGCG GGACGCCGGC GGTCGCAGCG CCGCAGAAGC
  AGGTGCGTGA TAGGGCGGAG GCCACTCACC GGCTCGGGCG CGTCCTCCGC AGGGCTAGAG
  CTCAGCCCCG GCCCTGGCAG GTCGCGGCCC CGCCCGGCAC CGCGAACTTT CGGTTTCCAG
  TCCCTGCAGC CCCTGGGCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356497147	MGP_WTSI_2_166888004	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227353450					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356497147	MGP_WTSI_2_166888004	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166904424 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12730	CpG island 12730	within coordinates
Gm25878	predicted gene, 25878	969 bp upstream
Gm56406	predicted gene, 56406	512 bp upstream
Gm75600	predicted gene, 75600	1391 bp downstream
Rr397500	regulatory region 397500	626 bp upstream
Rr570437	regulatory region 570437	1942 bp distal
Rr570438	regulatory region 570438	1730 bp distal
Rr570439	regulatory region 570439	614 bp distal
Rr570440	regulatory region 570440	within coordinates
Rr570441	regulatory region 570441	501 bp proximal
Rr570442	regulatory region 570442	1851 bp proximal
Tssr21786	transcription start site region 21786	1957 bp downstream
Tssr21787	transcription start site region 21787	1215 bp downstream
Tssr21788	transcription start site region 21788	1202 bp downstream
Tssr21789	transcription start site region 21789	311 bp upstream
Tssr21790	transcription start site region 21790	709 bp upstream
Tssr27736	transcription start site region 27736	1668 bp upstream
Tssr27737	transcription start site region 27737	1657 bp upstream
Tssr27738	transcription start site region 27738	1612 bp upstream
Tssr27739	transcription start site region 27739	1428 bp upstream
Tssr27740	transcription start site region 27740	54 bp downstream
Tssr27741	transcription start site region 27741	103 bp downstream
Tssr27742	transcription start site region 27742	228 bp downstream
Tssr27743	transcription start site region 27743	360 bp downstream
Tssr27744	transcription start site region 27744	477 bp downstream
Zfas1	zinc finger, NFX1-type containing 1, antisense RNA 1	430 bp upstream
Znfx1	zinc finger, NFX1-type containing 1	within coordinates