rs227355156 SNP Detail

Summary

• ID
  rs227355156
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121980666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGTGTAT GTGTGTGTGC
  ACATACAAAT AACAATGGAA AGAGTTTACA TTATTTTCTT TCCATGTCCC TATAGCGTGC
  AGTAGCTATT CCCAACATGT TGAGCGACTT CAGCTATCTG AAAGCCCCAT ATCCCCTTGC
  ACACACTGCT TACTTCCAGC AGAGTGCATT CTCAATTGTC ATGGTCCTCA CATCTCCCTC
  Y
  GGTCCTTTAC CCATCCCAAC TCAGTTGCTT AAAGCTTTCC TAGCTTCTGT GGTATTTTAA
  ATTTTGTTTG TTTTCTAGTT CATGAAACCA GAGGTTTGGT TTCAGAATGC AAACTCTGGG
  CTGGAACAGA GAAACCCTGG GTTGACTCGC ATAGGAACCT CATTAGGGAG GAGCCAATGC
  TAACACCTGC CACCTGAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355480710	MGP_WTSI_2_121975921	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227355156					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355480710	MGP_WTSI_2_121975921	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121980666 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	within coordinates
Cpgi12169	CpG island 12169	1941 bp distal
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	within coordinates
Rr563913	regulatory region 563913	982 bp distal
Tssr19807	transcription start site region 19807	1001 bp downstream
Tssr19808	transcription start site region 19808	927 bp downstream
Tssr19809	transcription start site region 19809	611 bp downstream
Tssr19810	transcription start site region 19810	377 bp upstream
Tssr19811	transcription start site region 19811	690 bp upstream
Tssr19812	transcription start site region 19812	725 bp upstream
Tssr19813	transcription start site region 19813	749 bp upstream
Tssr19814	transcription start site region 19814	772 bp upstream
Tssr19815	transcription start site region 19815	788 bp upstream
Tssr19816	transcription start site region 19816	804 bp upstream
Tssr19817	transcription start site region 19817	827 bp upstream
Tssr19818	transcription start site region 19818	850 bp upstream
Tssr19819	transcription start site region 19819	907 bp upstream
Tssr25955	transcription start site region 25955	725 bp downstream
Tssr25956	transcription start site region 25956	802 bp downstream
Tssr25957	transcription start site region 25957	920 bp downstream