rs227355482 SNP Detail

Summary

• ID
  rs227355482
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124154670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCATTACC TTTGCATACT
  GGGGTTGCCT GGTCTGAGGT TAGATTGTTG CTTACTGTGA TGTAGTCCCA GGACGAGGAT
  GGTTTCCAGG ATGCTCGGCC TGTGGTTTCG CAGCCCCAAG AGGCACAATA GAAGGATTCT
  GGACCACCAC ACGACCGGGC CCACCGGGGG CGATGTGGCC CGGGGCAGAC ATAGAATCCT
  Y
  CATTGTGGGC ATGTGTCACT TTAGATAACT TAAGTCTGTT CCAGGCCGTA TTGCACCGGG
  GAGTATATGA AGTCAGGGGC TCCTCACAAT CTCTGGAACA GCCTGGCGTG GAGTCGCTGC
  TTCCTGAACA GCAGGGGGGC CCCGGGGGAG GAGAAAAAGG AGCCCGATAT TCTAGGCCCC
  AATAGGACGG CCCGTGGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322855352	CHEV_8_125951831	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227355482					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124154670 () rs orientation: forward

Symbol	Name	Function Class
Mela	melanoma antigen	within coordinates
Tssr2728	transcription start site region 2728	451 bp upstream
Tssr79965	transcription start site region 79965	479 bp upstream
Tssr83353	transcription start site region 83353	1192 bp upstream
Tssr83354	transcription start site region 83354	365 bp upstream
Tssr83355	transcription start site region 83355	272 bp upstream
Tssr83356	transcription start site region 83356	202 bp upstream
Tssr83357	transcription start site region 83357	83 bp upstream
Tssr83358	transcription start site region 83358	171 bp downstream
Tssr83359	transcription start site region 83359	1034 bp downstream
Tssr83360	transcription start site region 83360	1141 bp downstream
Tssr83361	transcription start site region 83361	1515 bp downstream
Tssr83362	transcription start site region 83362	1664 bp downstream