rs227357149 SNP Detail

Summary

• ID
  rs227357149
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57553238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTTGCTG GCCTTCGCGA
  AGGCTCCCGA AGGTCCTTTC AGAGGGCCAC CAGCATGCTA GAGCCAACCT CTCAGCTTCC
  TCTAGGCGAA GCTTCCTTGC TAGAGTGGAG GTTAGGCCTA GACTCTTCTG GGACAGTAAG
  CATGCATTTA CACGGCCCCT GCTCTGTAGT CTACCACCGT CTCTGCTTCC TCCTCCTCCT
  Y
  CTCCTCCTCT TCCCCCCCCC CCCCCCCCCA GCGAAGTTTT CTTTCTATAG TGGAGGCTAG
  GCCTAGACTC TTCTGGGACA GTAAGCATGC ATTTACACAG CCCCTGCTCT GTAGTCTACC
  ACCGTCCTTC TCCTTCCTTC TCCTCCACCT CCTTTCTCCT CTCTCCTCCT CCTCTTCTTC
  CTTCTCTTCC TCTTCTTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377693420	MGP_WTSI_9_57493762	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	C	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227357149					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	C	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377693420	MGP_WTSI_9_57493762	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57553238 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21828	CpG island 21828	within coordinates
Csk	c-src tyrosine kinase	within coordinates
Rr679716	regulatory region 679716	429 bp distal
Rr679717	regulatory region 679717	within coordinates
Rr679718	regulatory region 679718	242 bp distal
Rr679719	regulatory region 679719	640 bp proximal
Rr679720	regulatory region 679720	1466 bp proximal
Tssr85319	transcription start site region 85319	676 bp downstream
Tssr85320	transcription start site region 85320	158 bp downstream
Tssr89801	transcription start site region 89801	1715 bp upstream
Tssr89802	transcription start site region 89802	819 bp upstream
Tssr89803	transcription start site region 89803	775 bp upstream
Tssr89804	transcription start site region 89804	748 bp upstream
Tssr89805	transcription start site region 89805	512 bp upstream
Tssr89806	transcription start site region 89806	414 bp upstream
Tssr89807	transcription start site region 89807	283 bp upstream
Tssr89808	transcription start site region 89808	755 bp downstream
Tssr89809	transcription start site region 89809	791 bp downstream