rs227372222 SNP Detail

Summary

• ID
  rs227372222
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114269052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTCGCCGC AGAGCCAATC
  AGTGTGCAGC GTGCCCGCCC TGCTCCTCGC GTGGTCCAAT CAAAAGCGGC AAGGGGCGGG
  AGCTGTTTTG CCGCGAAAAG CCCACGTGGA AGGTCTTGGG TGAGGCGCGC GGGGCAGCAC
  CAGGCAGCGC GAGACTGCGG TGCTGCGGGT CCCGGGCAGG AGAGCCGCGC ACCCCGTTTA
  Y
  CAGCCAGACT GGGACACCTT AGAGGTCCAA AACAACCGCG CGCGTCCACG GCCGCCATGC
  CGAGACATCT ACCAATGGGG ACGGAGCTCG GCCGCCTCAG AGTCAATCGG TGTGCAGCGT
  GCCCACCCTG CCCTTGTATA GTCCAATCAG AAGCGGCAAG GGGCGGGAGG TGTTTTGCCG
  CGAAAAGCCT GCGTGGGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366325809	MGP_WTSI_5_114581000	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227372222					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366325809	MGP_WTSI_5_114581000	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114269052 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16310	CpG island 16310	within coordinates
Gm73235	predicted gene, 73235	1694 bp downstream
Gm73237	predicted gene, 73237	277 bp upstream
Rr617829	regulatory region 617829	595 bp distal
Rr617830	regulatory region 617830	55 bp distal
Rr617831	regulatory region 617831	512 bp proximal
Tssr48056	transcription start site region 48056	615 bp downstream
Tssr48057	transcription start site region 48057	547 bp downstream
Tssr48058	transcription start site region 48058	166 bp upstream
Tssr48059	transcription start site region 48059	193 bp upstream
Tssr48060	transcription start site region 48060	1219 bp upstream
Tssr52695	transcription start site region 52695	265 bp upstream
Tssr52696	transcription start site region 52696	595 bp downstream
Ung	uracil DNA glycosylase	within coordinates