rs227373068 SNP Detail

Summary

• ID
  rs227373068
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:73058858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGCCCCT TGGATACCTG
  CGATTGCAGC ATACCGTTCC AGGAGCCATG TTTCCCTCCG AGGCCCACAG AGCCTGCTTG
  ACAGCGTAAC ACTAGGACCT GGGAGAAAAG CTGCAGGCTC TGCGGTAGGA TGGAGGCTGG
  GAAACTTTTG TTTCCAGGCA GGATTATCTC AGGAAGGCTG GATTGTGTCT CTGCTGAGAC
  M
  CAACACTGCC CTCTGCTGGT GGAAGGATGC CATTGCTTCC TGTCGGCCTC CTTCCACAGC
  TCAGTGCCCA GTTAAGTCCC GGGCTCACAT CCAGCCACTC AGCACTAGCA TTCAGAGTGC
  CCTTTTCCAG GGTACAGCCA TCCTCCCCTG CGCTGATGCA CCATCCAAAG ATCTGCAGAC
  CCACAGCCCA AGCCAAGGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394546543	MGP_WTSI_15_73017439	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227373068					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394546543	MGP_WTSI_15_73017439	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:73058858 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7161	CpG island 7161	1265 bp distal
Rr369949	regulatory region 369949	within coordinates
Rr404436	regulatory region 404436	1738 bp downstream
Rr504021	regulatory region 504021	1584 bp distal
Rr504022	regulatory region 504022	1751 bp distal
Rr504023	regulatory region 504023	1537 bp distal
Rr504024	regulatory region 504024	within coordinates
Rr504025	regulatory region 504025	3 bp proximal
Tssr134685	transcription start site region 134685	1753 bp upstream
Tssr134686	transcription start site region 134686	1726 bp upstream
Tssr134687	transcription start site region 134687	1692 bp upstream
Tssr134688	transcription start site region 134688	1658 bp upstream