rs227380542 SNP Detail

Summary

• ID
  rs227380542
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83466907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAACCTATA AATCTTGAAC
  ACTGAATCCG TGAGTTATAG GACAGGCAGC AATCTGAAGA GTCTTGAAAG CCTGCAAGAA
  AACAAGGGGG CACTCAAAGG CCAGGTCATT GCTGGGGTGA TGGTCCCATG GGGGCATAAG
  AAGGCCCCGG GACTCAGGGG AGGCTTCCCC TCACCCTGCA CTCATTGTCA TCTCTTTCTG
  Y
  ACCTTTGAGT GGGCCTAACG TGGACCACAA TCAGGCTGGG AACATGTCCA TAGAAGGGAA
  GCCATGCGCA GTCACCTATA GGTGACTTCT GCCCCAAGGC AGACTCGGTG CATAGAGAAG
  GCACATCTGT AGGGAATACT AATGGCCCAT CCTGATCTTC TTGAAGATTT TTGGACAGCA
  TCCTCAACCA CCCTCATGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384072535	MGP_WTSI_11_83389583	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227380542					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384072535	MGP_WTSI_11_83389583	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83466907 () rs orientation: forward

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	within coordinates
Tssr103714	transcription start site region 103714	1401 bp downstream
Tssr103715	transcription start site region 103715	1351 bp downstream
Tssr103716	transcription start site region 103716	715 bp downstream
Tssr109679	transcription start site region 109679	1732 bp upstream
Tssr109680	transcription start site region 109680	1481 bp upstream
Tssr109681	transcription start site region 109681	1362 bp upstream
Tssr109682	transcription start site region 109682	1087 bp upstream
Tssr109683	transcription start site region 109683	1039 bp upstream
Tssr109684	transcription start site region 109684	1013 bp upstream
Tssr109685	transcription start site region 109685	972 bp upstream
Tssr109686	transcription start site region 109686	903 bp upstream
Tssr109687	transcription start site region 109687	849 bp upstream
Tssr109688	transcription start site region 109688	808 bp upstream
Tssr109689	transcription start site region 109689	766 bp upstream
Tssr109690	transcription start site region 109690	757 bp upstream
Tssr109691	transcription start site region 109691	743 bp upstream
Tssr109692	transcription start site region 109692	715 bp upstream
Tssr109693	transcription start site region 109693	598 bp upstream
Tssr109694	transcription start site region 109694	171 bp upstream
Tssr109695	transcription start site region 109695	123 bp upstream
Tssr109696	transcription start site region 109696	866 bp downstream
Tssr109697	transcription start site region 109697	1056 bp downstream