rs227381096 SNP Detail

Summary

• ID
  rs227381096
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:51893254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACCTTGT CTTGGGGGAA
  AACAGGCTTT TTAAATCCCC TGGGCCGGTA ACAAGTGCCT GGGCTTTTTT AAATTTCCGT
  CCAGCCATAC CAATGTTAAT CTTCCTCATG ATCAAGAAAT ACATAGAGTG AAATGGCAGA
  CGCTTTTTAA AAATCTCATT CTGTTGCTTA TCTAGCAATT TATTACTTTA AAAAATGGAC
  R
  GGATAGTTTT TAATATCCAA AATGAAATGT TTTGATAAAT TGAATGCTTC CCAAAAATAT
  AGAGAGCAGA ATGTTAACAA AATTCACACA ATTTCATGGC CAGGTGGCTT GCTGGAAACC
  TACAACCGCA GTCTTAGAAC TATAATTTCA CTTATTAAAA CAGGGTAACT TGCTATGTAG
  ACCAGGCTGG CCCCAATCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383367121	MGP_WTSI_11_51815929	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227381096					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383367121	MGP_WTSI_11_51815929	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:51893254 () rs orientation: forward

Symbol	Name	Function Class
Cdkl3	cyclin dependent kinase like 3	1794 bp upstream
Cpgi2846	CpG island 2846	1483 bp distal
Cpgi2847	CpG island 2847	1625 bp proximal
Gm12204	predicted gene 12204	516 bp downstream
Rr246699	regulatory region 246699	653 bp distal
Rr246700	regulatory region 246700	746 bp proximal
Rr386068	regulatory region 386068	within coordinates
Tssr101302	transcription start site region 101302	1499 bp downstream
Tssr101303	transcription start site region 101303	1479 bp downstream
Tssr101304	transcription start site region 101304	1764 bp upstream
Tssr101305	transcription start site region 101305	1793 bp upstream
Tssr101306	transcription start site region 101306	1886 bp upstream
Tssr101307	transcription start site region 101307	1913 bp upstream
Tssr107840	transcription start site region 107840	1999 bp upstream
Tssr107841	transcription start site region 107841	1952 bp upstream
Tssr107842	transcription start site region 107842	1683 bp upstream
Tssr107843	transcription start site region 107843	1652 bp upstream
Tssr107844	transcription start site region 107844	1633 bp upstream
Ube2b	ubiquitin-conjugating enzyme E2B	1665 bp upstream