rs227381142 SNP Detail

Summary

• ID
  rs227381142
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119067694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCCGGCT CTAACCGGAA
  AGGAAGGCCG GAGGCAACCG CACCTGCGCC ACCTTGCAGG GGTGTCGCGG CCCAATGTGG
  GCTTAGGGAC GCACTTCTGG TGTTCAGGGA CCCAACGAGT GGCTGGACTC CGTGGAGCCA
  GGGTAGAGCC GCCTCCAGGG CACGCGGGCC TCACCCACGC CGCTGGGCGT TCGGAAACCA
  S
  GGGCGCTGCG GCTGGGTCTG GGGTGGCTGA GCCGCCCGGC GGGTCCAGCC GGAAGTTCTG
  CTGGGCAGGA CCGGTGGGAG TACAACCGGC GTGGGCGGGG CCGGCGGCGC AGGGGTTAAT
  GCCAGTCCCG CCCCGCGCTC TGACTCAGTT TCACCAGAAA CTAGAAAGGC CGGGAGGAGG
  CAGCCAATCT TCCGTGCAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355426192	MGP_WTSI_2_119062949	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227381142					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355426192	MGP_WTSI_2_119062949	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119067694 () rs orientation: forward

Symbol	Name	Function Class
9130007G19Rik	RIKEN cDNA 9130007G19 gene	within coordinates
Cpgi12109	CpG island 12109	within coordinates
Rr563445	regulatory region 563445	within coordinates
Rr563446	regulatory region 563446	137 bp distal
Rr563447	regulatory region 563447	52 bp proximal
Rr563448	regulatory region 563448	166 bp proximal
Rr563449	regulatory region 563449	408 bp proximal
Rr563450	regulatory region 563450	864 bp proximal
Spint1	serine protease inhibitor, Kunitz type 1	147 bp upstream
Tssr19609	transcription start site region 19609	within coordinates
Tssr19610	transcription start site region 19610	138 bp upstream
Tssr19611	transcription start site region 19611	177 bp upstream
Tssr19612	transcription start site region 19612	240 bp upstream
Tssr19613	transcription start site region 19613	269 bp upstream
Tssr19614	transcription start site region 19614	298 bp upstream
Tssr19615	transcription start site region 19615	318 bp upstream
Tssr19616	transcription start site region 19616	421 bp upstream
Tssr19617	transcription start site region 19617	433 bp upstream
Tssr19618	transcription start site region 19618	465 bp upstream
Tssr19619	transcription start site region 19619	512 bp upstream