rs227382173 SNP Detail

Summary

• ID
  rs227382173
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:82211502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGACCTT CACCATCCTG
  AAGCTCTGCA GTCTGGGTAA GGAAGGGGCG TGCAAGACCT GCAAAAGTGG GGCCCTTCGT
  CAGAATATAC TTCCTGGTTT TAAAAAAAAA TAGAAGGCTA AACGTGGATT CGAGATTTTC
  TATAGTAGTG CTTTTTTAAT AAGTTTATCT CAAAGAAAAG AAGAAACATT GAACTAGGTT
  W
  AAAAAAAAAA AAAAAAAGGA ACAGTTGCCC TAGGCCTCTG TACCCAAGAG GCAGGCAGGG
  ATGCCCACAG TGTGCCATGT ACTTTAGCAA CAATTGTTCA TTCACGGGTG ACAAGGAGAG
  GGGACTGCCT GGAAAGAATA CTGTGTCCTG TAGGGTTGCA CTCTTCAGCA AATAGGTCAG
  AAAGACACTA TGAGCTTGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	WSB/EiJ
ss362186485	MGP_WTSI_4_81939169	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	WSB/EiJ
rs227382173					SNP	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362186485	MGP_WTSI_4_81939169	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82211502 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nfib	nuclear factor I/B			mRNA-UTR
				Noncoding-Transcript-Variant
Rr594308	regulatory region 594308			1451 bp distal
Tssr42221	transcription start site region 42221			within coordinates
Tssr42222	transcription start site region 42222			412 bp downstream
Tssr42223	transcription start site region 42223			618 bp downstream
Tssr42224	transcription start site region 42224			1108 bp downstream
Tssr42225	transcription start site region 42225			1165 bp downstream
Tssr42226	transcription start site region 42226			1398 bp downstream
Tssr42227	transcription start site region 42227			1446 bp downstream
Tssr42228	transcription start site region 42228			1517 bp downstream
Tssr42229	transcription start site region 42229			1621 bp downstream