rs227384918 SNP Detail

Summary

• ID
  rs227384918
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:57009240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGGGAGGG GGCGGAGGGG
  AGGAAAGGGG GAGGGAAAAA AAAAAGAGGG AAAACCGCTC ACACACGTGA TAGACGATCA
  GGCCAGTGGC AGAGCACTGC ACCGCAGCCA CACAAACTTC CTCCCACGCT GCAGAAGGGT
  ACCGAAGGGT CCCGGGAAAG CAAGTCCCAA CCAAACAAAC ACTGGAGGTC CCAAAGCTGC
  Y
  CAGAACTTGA GGTACTAAGA CCTGCTCTGT CTCAGGTCCC AAGAGTTAGC CCTCAGTTGT
  GTGGACAGAG TCGGACCTCG AAGCCTTTAA GCAGTACCCC ATTCATTGCG GGCAGCGCTG
  GCATTATCCT CTCTTTGATA AAGAGCCACC ACCACCATAA GCCCCACTTG GGGTGTCAGG
  GTTTTGAAAG GAGCGTACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349733822	MGP_WTSI_1_57026925	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227384918					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349733822	MGP_WTSI_1_57026925	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:57009240 () rs orientation: forward

Symbol	Name	Function Class
9130024F11Rik	RIKEN cDNA 9130024F11 gene	1388 bp upstream
Cpgi267	CpG island 267	80 bp distal
Cpgi268	CpG island 268	748 bp proximal
Cpgi269	CpG island 269	1381 bp proximal
Satb2	special AT-rich sequence binding protein 2	within coordinates
Tssr6736	transcription start site region 6736	1370 bp upstream
Tssr6737	transcription start site region 6737	1952 bp upstream
Tssr11745	transcription start site region 11745	231 bp upstream
Tssr11746	transcription start site region 11746	206 bp upstream
Tssr11747	transcription start site region 11747	1186 bp downstream
Tssr11748	transcription start site region 11748	1200 bp downstream
Tssr11749	transcription start site region 11749	1232 bp downstream
Tssr11750	transcription start site region 11750	1257 bp downstream
Tssr11751	transcription start site region 11751	1613 bp downstream
Tssr11752	transcription start site region 11752	1631 bp downstream
Tssr11753	transcription start site region 11753	1669 bp downstream
Tssr11754	transcription start site region 11754	1681 bp downstream