rs227387946 SNP Detail

Summary

• ID
  rs227387946
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75412661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCTAGCT GGAATGTGGT
  GAGTTTTACT TCTGCTCTCC ACTAATCTGT GCCTGCATCC CACCATGCCG GTGTCTCAGC
  CCTCCCCGAC GTTTCATTTC ATGTCTCCCT GCACCAGTCT TGCTCCTCCC TGAGAGCAAT
  GCTTCTGCTT CACTTCTGTC TCAGTCTCCA GCGTGGGCAG ACACTCACAC ACGAGAGGAA
  Y
  CGACACACGA GTGGTTTTCT CTCTTTCTTT TATAGATTCC TTGGGTCTCC TGTGATCAGG
  CCCAAGCACC TACAGAATGC TCCTGCTCTC TGTCCCCCAG GTAATCAAAT ATAGATTGGT
  TCCTTTTCAT GAGGCACGGC TGTTGGGTCT TTGCTCCATT CTGAAACCAC AAGAGTGCAG
  AAGCAGACAG GCAGATGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391577221	MGP_WTSI_14_75575028	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227387946					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391577221	MGP_WTSI_14_75575028	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75412661 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr404213	regulatory region 404213	1461 bp upstream
Rr495436	regulatory region 495436	163 bp proximal
Tssr4478	transcription start site region 4478	269 bp downstream
Tssr126621	transcription start site region 126621	243 bp downstream
Tssr126622	transcription start site region 126622	213 bp downstream
Tssr126623	transcription start site region 126623	1368 bp upstream
Tssr126624	transcription start site region 126624	1412 bp upstream
Tssr126625	transcription start site region 126625	1571 bp upstream
Tssr126626	transcription start site region 126626	1586 bp upstream
Tssr126627	transcription start site region 126627	1602 bp upstream
Tssr126628	transcription start site region 126628	1913 bp upstream
Tssr129768	transcription start site region 129768	414 bp upstream
Tssr129769	transcription start site region 129769	1359 bp downstream
Tssr129770	transcription start site region 129770	1428 bp downstream