rs227388167 SNP Detail

Summary

• ID
  rs227388167
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70059051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCATTGTGA AGAGGATACA AGGTCCTTAG GAAGACAGGG
  TCAACGAAGA CCTCAGGGAC TCATCTTCCT GTGCTCTATA GGGGTGTACA ATGCAGGGAC
  M
  TGGGGTTGGA GGGGAGCTCA TTTAATTAGT CCTGCAGGCA TGTGTGAACC CTGCCGGCCC
  CTATCTGGGT GCTCCCAGTT TCTCCCCCAC AGGCTCGGA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323733899	CHEV_11_69981727	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227388167					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70059051 () rs orientation: forward

Symbol	Name	Function Class
Clec10a	C-type lectin domain family 10, member A	within coordinates
Rr251315	regulatory region 251315	1189 bp distal
Tssr102659	transcription start site region 102659	1562 bp downstream
Tssr102660	transcription start site region 102660	1518 bp downstream
Tssr102661	transcription start site region 102661	1441 bp downstream
Tssr102662	transcription start site region 102662	1027 bp downstream
Tssr102663	transcription start site region 102663	1003 bp downstream