rs227403096 SNP Detail

Summary

• ID
  rs227403096
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:40519169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGATCAAA CGTAAGTTTG
  CGCGCGGGAC TGGGAGTTGG TGGGATCGGT TCCTGGGAGA GGGGCGCACG CGGAGGGAAA
  GATGGGAGAC ACTCGGGGAG ATCCGCTCCT AGTCCTCGAG ATTTGTCAAA CTTTGCAAGC
  TATCAGGGAA AACCAGACGG CCGCAGACAG ATGCACAGCC AGTTGGAGCG CCGGGCAGCC
  K
  CAGCCCAGTG TTTCTCCAAC CTTCGCGCTC CCGGGTTCTC GGTTATTTCA ACTCTGGTTT
  GCTGCAATCG TCGCCCTTTT TATGCTGAAA TCTAACAGGA CAATCCGCTC CCGCAGAGCT
  TAGTATGATT GTTGTCCTTG TTGTTGTCCT GGCGGTTGGC CTACCACTCT TGGGAGCATG
  TCTTGGTAAC CCGGGATGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss393745600	MGP_WTSI_15_40487319	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227403096					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss393745600	MGP_WTSI_15_40487319	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:40519169 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7065	CpG island 7065	within coordinates
Gm63080	predicted gene, 63080	within coordinates
Rr501588	regulatory region 501588	728 bp distal
Rr501589	regulatory region 501589	165 bp distal
Rr501590	regulatory region 501590	within coordinates
Rr501591	regulatory region 501591	1718 bp proximal
Tssr4586	transcription start site region 4586	471 bp downstream
Tssr131170	transcription start site region 131170	882 bp downstream
Tssr131171	transcription start site region 131171	852 bp downstream
Tssr131172	transcription start site region 131172	769 bp downstream
Tssr131173	transcription start site region 131173	719 bp downstream
Tssr131174	transcription start site region 131174	691 bp downstream
Tssr131175	transcription start site region 131175	548 bp downstream
Tssr131176	transcription start site region 131176	507 bp downstream
Tssr131177	transcription start site region 131177	452 bp downstream
Tssr131178	transcription start site region 131178	416 bp downstream
Zfpm2	zinc finger protein, multitype 2	within coordinates