rs227404132 SNP Detail

Summary

• ID
  rs227404132
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:75296534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTCAGACA GAGCTCTTGG
  GTCAAGCTGC ACCTCATCGA TATCAAAGTT GTTATGAATA GGCCAGTCAT GCTCCGAGAA
  CTGACAATCG TGGTACCTGA AGCAAACACA GGCATTACTC CATGTGATGA CTTTACTTTC
  AAACAGTGTG CTCTCTGTGG AAACAAGTGC TTTTCACTTG GCTGTTTGCA GAGCCTCCCC
  M
  TGTACAGCCA GGCTGACCTC ACACTTGTGT CCATCCTGCT CAGTCTCCCC AGTGCTGAGA
  TAGAGGCAGA CCCACCACAC CCAGCTCTGA GTGAGTGCTT TTAAGGAAAA GTACTATTCA
  GGGAGAACTG TATCAAGGGA CAGGAAATGG GGTGAGCAAA CAGAAGGGGC ATGCCGTGCA
  GGTGAGACGG CGGACCTTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323008201	CHEV_9_75237059	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227404132					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:75296534 () rs orientation: forward

Symbol	Name	Function Class
Mapk6	mitogen-activated protein kinase 6	Intron
Tssr90535	transcription start site region 90535	1763 bp upstream
Tssr90536	transcription start site region 90536	1354 bp upstream
Tssr90537	transcription start site region 90537	1279 bp upstream
Tssr90538	transcription start site region 90538	1251 bp upstream