rs227407114 SNP Detail

Summary

• ID
  rs227407114
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:137179794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    atacaaagt tgggaggggt ttgaaggtag
  agagtggatt tgggagtggt ggagcatgaa catgctcaaa atatattata tgcatctagg
  aaattctcaa gaaacaaCAG TATATAAATG TAATAAATAG AAATACATAA ATTAAAAGTA
  R
  GTGACTGGAG TTTGGCATTA AACTGTGACC AGCATTGTTC AGATAGAAGG AGGTATGTAC
  AAGAGATATT GTTTCAACTT TCCAGGGTAT TCTGTTTCTT TTAGGAAAGG TTGAGGCTTT
  CATAGCCTGG GTTTTTCTAG GATGTAGCTT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319998178	CHEV_1_139148633	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227407114					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:137179794 () rs orientation: forward

Symbol	Name	Function Class
Gm19215	predicted gene, 19215	988 bp upstream
Gm37057	predicted gene, 37057	86 bp upstream