rs227407287 SNP Detail

Summary

• ID
  rs227407287
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30305595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGGTAAA GACTGCGCCA
  CTGCTGGGGT GCTGGGGTCA GTGGGTTCGC GGCTCCGGTT CTAGGTTCAA GGTCGCCGAG
  TCACTGCCGC TAGCCAGTAG AGGCGGCCCC GCGGCCACCG GGCCCGGCGG GCTGCCGGTG
  GGGCAGGACT CACGGGGCGG AGCTTTGGTG GCTCGCAGTC CCCGGCCGCT CGCCCCGATC
  Y
  CGGGGTGGGC CCAAGCCGGG GAGTGGCCGC AGAGGGCGGG GCTTGCGGAG ACGGACCTCT
  AGCTCAGCTG TTAGCAGCCC GGCGCTGGGC TCCCGTCACG GGGTCACAAC GGTAGGCGCT
  GTCCCGCTCG TGCTCTCCGC CTCCGAAAGC CACCTTAGCT GTCGAGGCGG TCACGTGCGT
  TCAAGTCTGA CTGGTGTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353515399	MGP_WTSI_2_30271103	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227407287					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353515399	MGP_WTSI_2_30271103	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30305595 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11436	CpG island 11436	within coordinates
Crat	carnitine acetyltransferase	within coordinates
Gm16323	predicted gene 16323	245 bp downstream
Ptpa	protein phosphatase 2 protein activator	467 bp upstream
Rr554310	regulatory region 554310	1857 bp distal
Rr554311	regulatory region 554311	1195 bp distal
Rr554312	regulatory region 554312	70 bp distal
Rr554313	regulatory region 554313	within coordinates
Rr554314	regulatory region 554314	570 bp proximal
Tssr17115	transcription start site region 17115	35 bp upstream
Tssr17116	transcription start site region 17116	448 bp upstream
Tssr17117	transcription start site region 17117	497 bp upstream
Tssr17118	transcription start site region 17118	513 bp upstream
Tssr17119	transcription start site region 17119	604 bp upstream
Tssr23369	transcription start site region 23369	1465 bp upstream
Tssr23370	transcription start site region 23370	1403 bp upstream
Tssr23371	transcription start site region 23371	215 bp upstream
Tssr23372	transcription start site region 23372	173 bp upstream
Tssr23373	transcription start site region 23373	154 bp upstream
Tssr23374	transcription start site region 23374	134 bp upstream
Tssr23375	transcription start site region 23375	78 bp upstream
Tssr23376	transcription start site region 23376	23 bp upstream
Tssr23377	transcription start site region 23377	within coordinates
Tssr23378	transcription start site region 23378	31 bp downstream
Tssr23379	transcription start site region 23379	51 bp downstream
Tssr23380	transcription start site region 23380	184 bp downstream
Tssr23381	transcription start site region 23381	420 bp downstream