rs227413004 SNP Detail

Summary

• ID
  rs227413004
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:30239347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAATTCGA GTTCTTTGCT
  CTTCCTTTTT CTTACTGGTT TCCCCTGTGA TGTTGAGACC CGTTATCTAG TACACATGGA
  ATAATGGTTT GTAGCTGGAA GAGAGTTCGC AGAAGCCTGA AGTTTGCCAG TTTTCTTTAT
  TGCCAAGTCC TGCTAAGAAA ATTGGCACCC TACGAATAAA GGTGGCTTAA CTAGATGCAA
  R
  CATACAAAAG AAGTTAAGAA GTGGGGCGAT GCTGGTTTCC TGACACTTCT GAGACATCCT
  TCTTCCCTTT GCTATGCAGG TCATTAGGCT CTGTGCCAAC TCTTCTTCTG TGCCCCTCAC
  CACCTTCCCC ATGTCCCTCC ACCTGGAGCT GTGGGCCTCT GAACATGACC TGTTTTGGGA
  AATGGACATT TTTACAATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324908844	CHEV_15_30168956	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227413004					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:30239347 () rs orientation: forward

Symbol	Name	Function Class
Ctnnd2	catenin delta 2	Intron
D15Mit249	DNA Segment, Chr 15, Massachusetts Institute of Technology-249	152 bp proximal