rs227413476 SNP Detail

Summary

• ID
  rs227413476
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54799763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTAATGGAA TGAGGGGGAG GGTACAGGAA
  ATAGGAGGCT GTGGGTAACT GTCTGGGCAG CACATTGAAG GGTAGAGATG TGGGGTGGGT
  ATAGAGAGGG GCTGAGATGG CAGATACACA CTGGGCCTAT GTATGTCCAT GCAAGTCGTG
  S
  GCTTGATAAA GGAGATTCCC AGCCCCCTTC CCTCAAGTCT CTTCATCTTA GTTCTGAGCT
  ATGTGTGGCT GCTCTGGACT CACTCAAGTA CACTCCTCCC AGGTATGTTC GACCAGGTGG
  GGGCTTTGTG CCTAATTTCC AGCTCTTTGA                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323674145	CHEV_11_54722439	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227413476					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54799763 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	within coordinates
Tnip1	TNFAIP3 interacting protein 1	1848 bp downstream
Tssr3502	transcription start site region 3502	704 bp downstream
Tssr3503	transcription start site region 3503	1178 bp upstream
Tssr101556	transcription start site region 101556	1807 bp downstream
Tssr101557	transcription start site region 101557	1777 bp downstream
Tssr101558	transcription start site region 101558	1760 bp downstream
Tssr101559	transcription start site region 101559	1737 bp downstream
Tssr101560	transcription start site region 101560	1691 bp downstream
Tssr101561	transcription start site region 101561	380 bp downstream
Tssr101562	transcription start site region 101562	333 bp downstream
Tssr101563	transcription start site region 101563	321 bp downstream
Tssr101564	transcription start site region 101564	300 bp downstream
Tssr101565	transcription start site region 101565	115 bp upstream
Tssr101566	transcription start site region 101566	165 bp upstream
Tssr101567	transcription start site region 101567	526 bp upstream
Tssr101568	transcription start site region 101568	602 bp upstream
Tssr101569	transcription start site region 101569	685 bp upstream
Tssr101570	transcription start site region 101570	707 bp upstream
Tssr101571	transcription start site region 101571	761 bp upstream
Tssr101572	transcription start site region 101572	856 bp upstream
Tssr101573	transcription start site region 101573	893 bp upstream
Tssr101574	transcription start site region 101574	907 bp upstream
Tssr101575	transcription start site region 101575	955 bp upstream
Tssr101576	transcription start site region 101576	969 bp upstream
Tssr101577	transcription start site region 101577	998 bp upstream
Tssr101578	transcription start site region 101578	1081 bp upstream
Tssr108006	transcription start site region 108006	1652 bp upstream
Tssr108007	transcription start site region 108007	363 bp upstream
Tssr108008	transcription start site region 108008	302 bp upstream
Tssr108009	transcription start site region 108009	286 bp upstream
Tssr108010	transcription start site region 108010	124 bp downstream
Tssr108011	transcription start site region 108011	720 bp downstream
Tssr108012	transcription start site region 108012	754 bp downstream
Tssr108013	transcription start site region 108013	848 bp downstream
Tssr108014	transcription start site region 108014	855 bp downstream
Tssr108015	transcription start site region 108015	938 bp downstream
Tssr108016	transcription start site region 108016	990 bp downstream
Tssr108017	transcription start site region 108017	1041 bp downstream
Tssr108018	transcription start site region 108018	1056 bp downstream
Tssr108019	transcription start site region 108019	1092 bp downstream
Tssr108020	transcription start site region 108020	1148 bp downstream
Tssr108021	transcription start site region 108021	1168 bp downstream
Tssr108022	transcription start site region 108022	1179 bp downstream
Tssr108023	transcription start site region 108023	1432 bp downstream