rs227416314 SNP Detail

Summary

• ID
  rs227416314
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:151339685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tccacccca ttatacatgt tgaaacaaca
  tgaacataac ttgataatgt tgttggtagt tctgttacct cagttagttg ggattagtta
  gaatctgact taaccccctg ttaaaactgt taaaacattt ctgtaaagta ttctatacat
  W
  cctcatgtga tgctttcttt gctgttcaat gaaaaagagc aaaaactttt TTAAATTTTT
  TTTTTTGTTA GTTTTTGTtt ttgtttttcg agacagggtt tctctgtata gccttggctg
  tcctggaact cactttgtag accaggctgg                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320056684	CHEV_1_153311064	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227416314					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151339685 () rs orientation: forward

Symbol	Name	Function Class
Rr420295	regulatory region 420295	1068 bp distal
Rr420296	regulatory region 420296	289 bp proximal