rs227417208 SNP Detail

Summary

• ID
  rs227417208
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75366975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACCTTAT GATAAACATT
  TTTCCGTATG GCTATTAGTA ACTGTCTTTA CTGAGATTGT AAATTAAGTA AAGCAAGGGA
  TTTCTATGGA AAAAAAACAC ACCAAGGTTA ATACACATAT CTGTACATAC CTGTATGTAC
  TATACGAACT TTCTTTTTTA ATAAAGGTAC TTTAGGGAGC TTTGGAGGTA AGGGTCTTCG
  Y
  AGAAGTAGTG GATGCTGCTG GGTTTTGAGT GAGCGATAAA TGCTCTTTTT CATAGCTGCT
  GGTTAAGTGA GAACTGAACT TCCTGAGAAC GAATCGTTAC TGAAAAGAAG TGGTTATCAC
  TTAGAAAATA TCCTTACGGA AACCATTCTG AGTTGCTATG ATACTGAGTT TAAGCAGGCT
  AGCATTGTAA GGAGGGGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391575910	MGP_WTSI_14_75529342	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227417208					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391575910	MGP_WTSI_14_75529342	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75366975 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6736	CpG island 6736	986 bp proximal
Cpgi6737	CpG island 6737	1559 bp proximal
Gm62951	predicted gene, 62951	835 bp downstream
Lcp1	lymphocyte cytosolic protein 1	1595 bp upstream
Lrrc63	leucine rich repeat containing 63	within coordinates
Rr297500	regulatory region 297500	425 bp proximal
Tssr4477	transcription start site region 4477	1092 bp downstream
Tssr126606	transcription start site region 126606	1572 bp upstream
Tssr126607	transcription start site region 126607	1691 bp upstream
Tssr126608	transcription start site region 126608	1738 bp upstream
Tssr126609	transcription start site region 126609	1997 bp upstream
Tssr129761	transcription start site region 129761	1051 bp downstream
Tssr129762	transcription start site region 129762	1073 bp downstream
Tssr129763	transcription start site region 129763	1109 bp downstream
Tssr129764	transcription start site region 129764	1373 bp downstream
Tssr129765	transcription start site region 129765	1470 bp downstream