rs227417418 SNP Detail

Summary

• ID
  rs227417418
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:46866800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGTCTTG GCGCCTTATG
  TGCTTTCGGG AGCAAGCCAG GATATAAATA AATAAAGCGA TATGTGGTCT CCACAGGGAC
  CCGGGAGGCA AACTGAAGAG GCAACAGCTG AGGGTGTACG CAGCTTCACA CACTGCACGA
  AACACAGATG AAGGCATCTG GGCACCCACG ACTTACATAG CTTCGGGCGG TTTCAGGATC
  Y
  TGATCCTCAG CCCTTCCACA CTGGAGGGGG CGGGAGGGGG ATGCGGGAAG TGTGGCTAAG
  CTAGCATTAT AAAAGACCCT AGAGGTTATC TAGTCCAGTC CTTCTGTAGA TAAGGAAAGT
  GACTCAGGGT ATTTTGTTCA AGGTCATGCA TCAAGTTAGT ATTTTAAGTC CTGATGCTAG
  GAATCCGGGT TAGTGGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385862581	MGP_WTSI_12_47921004	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227417418					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385862581	MGP_WTSI_12_47921004	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:46866800 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4580	CpG island 4580	5 bp distal
Gm60470	predicted gene, 60470	610 bp upstream
Nova1	NOVA alternative splicing regulator 1	657 bp upstream
Rr465708	regulatory region 465708	1099 bp distal
Rr465709	regulatory region 465709	1355 bp distal
Rr465710	regulatory region 465710	598 bp distal
Rr465711	regulatory region 465711	120 bp proximal
Tssr116213	transcription start site region 116213	1921 bp upstream
Tssr116214	transcription start site region 116214	1888 bp upstream
Tssr116215	transcription start site region 116215	1862 bp upstream
Tssr116216	transcription start site region 116216	1660 bp upstream
Tssr116217	transcription start site region 116217	1500 bp upstream
Tssr116218	transcription start site region 116218	1229 bp upstream
Tssr116219	transcription start site region 116219	1080 bp upstream
Tssr116220	transcription start site region 116220	1013 bp upstream
Tssr116221	transcription start site region 116221	991 bp upstream
Tssr116222	transcription start site region 116222	959 bp upstream
Tssr116223	transcription start site region 116223	921 bp upstream
Tssr116224	transcription start site region 116224	813 bp upstream
Tssr116225	transcription start site region 116225	768 bp upstream
Tssr116226	transcription start site region 116226	646 bp upstream
Tssr116227	transcription start site region 116227	519 bp upstream
Tssr116228	transcription start site region 116228	500 bp upstream