rs227417897 SNP Detail

Summary

• ID
  rs227417897
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36630911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCACCCCT TACTTCAAAG
  ACAGAGGTGC AGGTGCAGCC CTCTGAGGGC CACACATTCC CTGGCAGTCC TGTCTCCCAC
  CCAGGCTGCT TGCTTTGCTT TGTGCTCTGC TTTCCAGTTC CTTATCTTTC AAACCTAAGG
  TCATGAGGGA GCAACACTGA AATCCAGGGT CCAGGGCCTG TAGTGAGCTA CACTGCCACC
  R
  CCCCCCCCCC CACACACACA TGCTACCCTC CCTGCTGTAT CTGCACAAAG TTCAGAGCTG
  ACCTCCCAGC TGCCACAGCC ACCTTGCCTT AGAATCTGCT TCTGTGTGCT TTGTGATGCC
  CATCTAGACT CAAAAGGCAT TCTCACCCAG CCTCAGAGAG CAAACCACCT GTGGTCCTTC
  TCATTCTTCT AGTTCAAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	CE/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349254029	MGP_WTSI_1_36648675	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	CE/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227417897					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349254029	MGP_WTSI_1_36648675	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36630911 () rs orientation: forward

Symbol	Name	Function Class
Fam178b	family with sequence similarity 178, member B	within coordinates
Tssr11268	transcription start site region 11268	1485 bp downstream