rs227422380 SNP Detail

Summary

• ID
  rs227422380
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:37419457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGGAGAGG GTCTTTTACG
  TCACTGGGGA ACGCCTCCTG CCGGAGCGTC GCAATGGACC AATAGGGTGC TAGGGTCTAG
  AAATGATCGA CTGAAACATA GATCAATGAG CTAGGGAGAC CTGGAGGAGC CAACCAATCA
  AATAGCGACA AGAATACATT TTTATAAGAG AGGGCGTGCG CGCCCAGTGT CCTCCCTAAG
  M
  GTCTCCGCTT AAAGGAGGTT TGTTTCGCGA GTTTATTTCC TCAGAGAAAC CAAGCGGATT
  GAAGCGCTGT CTACATTTCA AATTAGTTTA GGTCGCGTGA GTCTGTCTGG ATTTAAAAGA
  ATGCACCACA TATATGAAAA TGCGCACGTG AGCAGAAATC TGAATTATCA CAGTTCTAGC
  ACACATTCAT TGCTAGCTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367987520	MGP_WTSI_6_37392522	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227422380					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367987520	MGP_WTSI_6_37392522	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:37419457 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17302	CpG island 17302	47 bp distal
Creb3l2	cAMP responsive element binding protein 3-like 2	374 bp upstream
Gm33318	predicted gene, 33318	within coordinates
Gm67278	predicted gene, 67278	within coordinates
Rr399613	regulatory region 399613	101 bp downstream
Rr628663	regulatory region 628663	387 bp distal
Rr628664	regulatory region 628664	within coordinates
Rr628665	regulatory region 628665	152 bp distal
Rr628666	regulatory region 628666	33 bp proximal
Rr628667	regulatory region 628667	1639 bp proximal
Tssr55612	transcription start site region 55612	within coordinates
Tssr55613	transcription start site region 55613	21 bp upstream
Tssr60356	transcription start site region 60356	594 bp upstream
Tssr60357	transcription start site region 60357	368 bp upstream
Tssr60358	transcription start site region 60358	350 bp upstream