rs227425790 SNP Detail

Summary

• ID
  rs227425790
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:79754957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCTCGCT CTTTCCCTCA
  GTCTGTGCCT CTGTGTGTGT GTGTGAGTGT GTGTGTGTGA CAGAGAGAGA GCGCGAGAGG
  AGAGCGAGAG AGCGAGCTGC GAGCTGTGCT GCCGCCGCCG CTGCCCTTTG ATCCCGACAT
  TAGTGTTAGG GGCTCGGAGA CACAGCGCGC GGCCATAGAC ACCGCCGCAC CGGCGCTCAT
  W
  TATTTATACC TCCCATCACA CGCGAGCACA GGACACACAC ACACTCACAC CTATTAGATC
  CGTTTCCATT GAAGAATATT ACGCTCGGGG ACAAGCCAGG TGCACGACCA AAAAATTAAA
  AAAAAAAAAA AAAAAGGAAA AAAAAAGAAA GAAAGAAAGA AAGAAAGGAA AGAAGAAAAC
  CCCTCTTCTG GCTCCAGGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322721750	CHEV_8_81552227	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227425790					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:79754957 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20619	CpG island 20619	within coordinates
Cpgi20620	CpG island 20620	359 bp proximal
Gm63940	predicted gene, 63940	within coordinates
Rr400985	regulatory region 400985	within coordinates
Rr665783	regulatory region 665783	1990 bp distal
Rr665784	regulatory region 665784	within coordinates
Rr665785	regulatory region 665785	280 bp proximal
Rr665786	regulatory region 665786	1781 bp proximal
Tssr2612	transcription start site region 2612	23 bp upstream
Tssr78123	transcription start site region 78123	350 bp downstream
Tssr78124	transcription start site region 78124	91 bp downstream
Tssr78125	transcription start site region 78125	19 bp downstream
Tssr78126	transcription start site region 78126	within coordinates
Tssr78127	transcription start site region 78127	237 bp upstream
Tssr78128	transcription start site region 78128	301 bp upstream
Zfp827	zinc finger protein 827	109 bp upstream