rs227435297 SNP Detail

Summary

• ID
  rs227435297
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:62766284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAC ACACACCACA CATACCAGAG
  S
  CACACACAGG CATACACCAT ACACA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319742693	CHEV_1_62773699	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227435297					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:62766284 () rs orientation: forward

Symbol	Name	Function Class
Nrp2	neuropilin 2	within coordinates
Rr412041	regulatory region 412041	1566 bp distal
Tssr6998	transcription start site region 6998	1315 bp downstream
Tssr6999	transcription start site region 6999	1091 bp downstream
Tssr7000	transcription start site region 7000	803 bp downstream
Tssr7001	transcription start site region 7001	717 bp downstream
Tssr7002	transcription start site region 7002	631 bp downstream
Tssr7003	transcription start site region 7003	583 bp downstream
Tssr7004	transcription start site region 7004	401 bp downstream
Tssr7005	transcription start site region 7005	342 bp downstream
Tssr7006	transcription start site region 7006	182 bp downstream
Tssr7007	transcription start site region 7007	157 bp downstream
Tssr7008	transcription start site region 7008	123 bp downstream
Tssr7009	transcription start site region 7009	53 bp downstream
Tssr7010	transcription start site region 7010	within coordinates
Tssr7011	transcription start site region 7011	40 bp upstream