rs227438243 SNP Detail

Summary

• ID
  rs227438243
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:26866975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCTGGGA CAGACTCACA
  AAGAAGACAT TTGCAAAACC CAGCTCCTCT GTAGCCCAAG CGGATTTTTT GTTTCTGTAG
  TGCTGGAGAC TGAATCCAGA GCTTCACATG TGCGATGCAA GCGCTCTACC ACTAAGCTAC
  TCTTAATATT TATACCACCA TTCCGGGGAG GGCTGTGTGG ATAGGGTTAT TTGAATGCCC
  S
  ACCCTTTCCA CCAACTCCAG GGCCTAACAA ATGGGCAATA AGTGGGCTTG GATACTTGCT
  GACATTTTGT GAGAGCAGCT GAAGCTGTCC TGAGGGGGGC TGCACCTGTC TCCAGAAGGC
  TATGGCTATA AAGACATCAG GGTACATTAA GTATGACCAG GAGTCCGGGT TGCACAAGAA
  CCACAGTGGC ACATGGCGAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370831976	MGP_WTSI_7_27952569	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227438243					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370831976	MGP_WTSI_7_27952569	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:26866975 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18626	CpG island 18626	371 bp distal
Egln2	egl-9 family hypoxia-inducible factor 2	748 bp upstream
Gm21983	predicted gene 21983	880 bp downstream
Rab4b	RAB4B, member RAS oncogene family	883 bp downstream
Rr400185	regulatory region 400185	174 bp downstream
Tssr2152	transcription start site region 2152	999 bp upstream
Tssr71351	transcription start site region 71351	1157 bp upstream
Tssr71352	transcription start site region 71352	1083 bp upstream
Tssr71353	transcription start site region 71353	1028 bp upstream
Tssr71354	transcription start site region 71354	826 bp upstream
Tssr71355	transcription start site region 71355	785 bp upstream
Tssr71356	transcription start site region 71356	1135 bp downstream
Tssr71357	transcription start site region 71357	1178 bp downstream